diff --git a/.gitignore b/.gitignore index 9adad58..6ff4b95 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ +.vscode/ + app/src/logs.log app/src/best_model.pkl app/src/dataset.csv @@ -8,4 +10,7 @@ __pycache__/ /package-lock.json -credentials.json \ No newline at end of file +# ignore in all directories +**/credentials.json + +backend/big_query.py \ No newline at end of file diff --git a/backend/Dockerfile b/backend/Dockerfile index e2b332c..6e2e770 100644 --- a/backend/Dockerfile +++ b/backend/Dockerfile @@ -18,8 +18,12 @@ COPY pyproject.toml poetry.lock ./ # Install the dependencies RUN poetry config virtualenvs.create false && poetry install --no-dev +# Copy the credentials.json file and compute dir into the container +COPY credentials.json ./ +COPY compute ./compute + # Copy the FastAPI application into the container -COPY . . +COPY main.py ./ # Specify the command to run the FastAPI application using uvicorn CMD ["uvicorn", "main:app", "--host", "0.0.0.0", "--port", "8000"] diff --git a/backend/README.md b/backend/README.md index 0546ac0..f8a8436 100644 --- a/backend/README.md +++ b/backend/README.md @@ -30,10 +30,7 @@ This will set up poetry. check installation using `poetry --version` - The `pyproject.toml` file is a configuration file that specifies the dependencies and other settings for your Python project. It doesn't automatically track the imports or other changes in your Python files. - If you add a new import to your Python files that requires a package not currently listed in your `pyproject.toml` file, you need to manually add that package to the `[tool.poetry.dependencies]` section of your `pyproject.toml` file. - This can be done by running `poetry add package-name` which will add the package to the `[tool.poetry.dependencies]` section and update the `poetry.lock` file to include the new package and its dependencies. -- No need to run `poetry lock` or `poetry install` after this because `poetry add` already does the equivalent of both commands. - -So, when u add a new dependancy to the code u do `poetry add package-name` -when u just wanna run u do `poetry install` +- Now, run `poetry lock` and then `poetry install` to install the new package and its dependencies. Next, to install the dependencies, run: `poetry install` diff --git a/backend/api-tests/requests.http b/backend/api-tests/requests.http index 07762a7..9cc54bb 100644 --- a/backend/api-tests/requests.http +++ b/backend/api-tests/requests.http @@ -10,8 +10,11 @@ GET http://127.0.0.1:8000/api/python #### Get Datasets GET http://127.0.0.1:8000/api/datasets +#### BigQuery test +GET http://127.0.0.1:8000/api/bq?filename=sample_contacts + #### Get Data -GET http://127.0.0.1:8000/api/data?filename=test +GET http://127.0.0.1:8000/api/data?filename=data #### Get AutoML GET http://127.0.0.1:8000/api/automl diff --git a/backend/backend/.dockerignore b/backend/backend/.dockerignore new file mode 100644 index 0000000..c7c52a9 --- /dev/null +++ b/backend/backend/.dockerignore @@ -0,0 +1 @@ +credentials.json \ No newline at end of file diff --git a/backend/data.csv b/backend/data.csv index d69d1a8..6cf742e 100644 --- a/backend/data.csv +++ b/backend/data.csv @@ -1,4 +1,6 @@ Id,name,age,height,weight 1,5,20,62,120.6 2,4,21,74,190.6 -3,3,17,68,120.0 \ No newline at end of file +3,3,17,68,120.0 +4,2,19,60,110.0 +5,1,22,72,150.0 \ No newline at end of file diff --git a/backend/main.py b/backend/main.py index a16b270..5975eae 100644 --- a/backend/main.py +++ b/backend/main.py @@ -1,12 +1,11 @@ -from io import BytesIO -import json +from google.cloud import storage +from google.cloud import bigquery from starlette.responses import FileResponse from io import BytesIO, StringIO import pandas as pd import os from fastapi import FastAPI, File, UploadFile, Form from fastapi.responses import JSONResponse -from google.cloud import storage from fastapi.middleware.cors import CORSMiddleware from compute.autoEDA import generate_eda import csv @@ -14,6 +13,7 @@ app = FastAPI() DATA_BUCKET = "automate-ml-datasets" +BQ_DATASET = "automl_dataset_1" GRAPH_BUCKET = "automate_ml_graphs" origins = ["*"] @@ -37,7 +37,7 @@ async def refreshDataSets(): global dataSetNames try: storage_client = storage.Client.from_service_account_json( - "../credentials.json") + "./credentials.json") blobs = storage_client.list_blobs(DATA_BUCKET) dataSetNames = [blob.name for blob in blobs] @@ -61,17 +61,16 @@ async def root(): return {"message": "Hello World"} -# please don't remove this endpoint, it can be used to check if the fe connection with be is working @app.get("/api/python") -async def root(): +async def root_py(): return {"message": "Hello from fastAPI backend"} - +# add a new dataset to the bucket @app.put("/api/upload") async def upload(file: UploadFile = File(...), fileName: str = Form(...)): try: storage_client = storage.Client.from_service_account_json( - "../credentials.json") + "./credentials.json") bucket = storage_client.get_bucket(DATA_BUCKET) # Assuming fileName includes '.csv' extension @@ -86,26 +85,28 @@ async def upload(file: UploadFile = File(...), fileName: str = Form(...)): except Exception as e: return JSONResponse(status_code=500, content={"error": f"An error occurred: {str(e)}"}) - +# list all the datasets in the bucket @app.get("/api/datasets") async def getDataSets(): if not dataSetNames: return {"error": f"No DataSets in Bucket"} return {"names": dataSetNames} - +# get the data from the bucket and return it as a string @app.get("/api/data") async def getData(filename): dataSetLines = "" try: - storage_client = storage.Client.from_service_account_json( - "../credentials.json") + storage_client = storage.Client.from_service_account_json("./credentials.json") bucket = storage_client.get_bucket(DATA_BUCKET) - blob = bucket.blob(f"{filename}") + blob = bucket.blob(f"{filename}.csv") with blob.open("r") as f: dataSetLines = f.read() + + # convert dataSetLines to be of type str | None (#TODO - check if this is necessary) + dataSetLines = str(dataSetLines) if dataSetLines else None # convert csv string -> json (for frontend) csv_reader = csv.DictReader(StringIO(dataSetLines)) @@ -120,13 +121,12 @@ async def getData(filename): } - +# Exploratory Data Analysis @app.get("/api/eda") async def eda(filename): corrMatrix = "" try: - storage_client = storage.Client.from_service_account_json( - "../credentials.json") + storage_client = storage.Client.from_service_account_json("./credentials.json") bucket = storage_client.get_bucket(DATA_BUCKET) blob = bucket.blob(f"{filename}.csv") @@ -155,13 +155,14 @@ async def eda(filename): return {"data": corrMatrix, "graph_url": public_url} +# return the model as a file @app.get("/api/automl") async def getModel(): try: #From #172 rawan/pandas-read-bucket # storage_client = storage.Client.from_service_account_json( - # "../credentials.json") + # "./credentials.json") # bucket = storage_client.get_bucket("data-test-automate-ml") # blob = bucket.blob("fish_data.csv") # byte_stream = BytesIO() @@ -180,3 +181,50 @@ async def getModel(): # Return the placeholder file return FileResponse(path=placeholder_model_path, filename=placeholder_model_path.split("/")[-1], media_type='application/octet-stream') + + return {"data": corrMatrix} + + +# get file from bucket, load it to big query as a table & display the rows +@app.get("/api/bq") +async def bq(filename): + # construct client objects (authorized with the service account json file) + bq_client = bigquery.Client.from_service_account_json("./credentials.json") + storage_client = storage.Client.from_service_account_json("./credentials.json") + + uri = f"gs://{DATA_BUCKET}/{filename}.csv" + table_id = f"{BQ_DATASET}.{filename}_table" + + # if file does not exist in the bucket, return an error + blob = storage_client.get_bucket(DATA_BUCKET).blob(filename + ".csv") + if not blob.exists(): + return {"error": f"File {filename}.csv does not exist in the bucket."} + + # if table does not exist, load it + try: + bq_client.get_table(table_id) + except: + job_config = bigquery.LoadJobConfig( + autodetect=True, # Automatically infer the schema. + source_format=bigquery.SourceFormat.CSV, + skip_leading_rows=1, # column headers + write_disposition=bigquery.WriteDisposition.WRITE_TRUNCATE, # Overwrite the table + ) + + load_job = bq_client.load_table_from_uri( + uri, table_id, job_config=job_config + ) # Make an API request. + + load_job.result() # Waits for the job to complete. + + # Query all rows from the table + query = f"SELECT * FROM `{table_id}`" + query_job = bq_client.query(query) + rows = query_job.result() + + # display the rows + data = [] + for row in rows: + data.append(dict(row)) + + return {"message": f"Loaded {table_id} with {rows.total_rows} rows.", "data": data} diff --git a/backend/poetry.lock b/backend/poetry.lock index 168f902..66e4726 100644 --- a/backend/poetry.lock +++ b/backend/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. [[package]] name = "annotated-types" @@ -44,13 +44,13 @@ files = [ [[package]] name = "certifi" -version = "2023.11.17" +version = "2024.2.2" description = "Python package for providing Mozilla's CA Bundle." optional = false python-versions = ">=3.6" files = [ - {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"}, - {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"}, + {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"}, + {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"}, ] [[package]] @@ -342,13 +342,13 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] [[package]] name = "google-api-core" -version = "2.15.0" +version = "2.16.2" description = "Google API client core library" 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= ["standard"], version = "^0.23.2"} google-cloud-storage = "*" +google-cloud-bigquery = "*" python-multipart = "*" pandas = "^2.2.0" seaborn = "^0.13.2" diff --git a/backend/sample_contacts.csv b/backend/sample_contacts.csv new file mode 100644 index 0000000..f86c38e --- /dev/null +++ b/backend/sample_contacts.csv @@ -0,0 +1,6 @@ +Id,name,email,phone,address,age +1,John Doe,johndoe@example.com,123-456-7890,123 Maple Street,19 +2,Jane Smith,janesmith@example.com,234-567-8901,456 Oak Street,20 +3,Emily Johnson,emilyjohnson@example.com,345-678-9012,789 Pine Street,21 +4,Michael Brown,michaelbrown@example.com,456-789-0123,012 Birch Street,19 +5,Linda Davis,lindadavis@example.com,567-890-1234,345 Cedar Street,20 diff --git a/frontend/.dockerignore b/frontend/.dockerignore new file mode 100644 index 0000000..17371e9 --- /dev/null +++ b/frontend/.dockerignore @@ -0,0 +1,2 @@ +# this file is only rerquired for local development and not within the container +.env.local \ No newline at end of file diff --git a/frontend/.env.local b/frontend/.env.local new file mode 100644 index 0000000..9839243 --- /dev/null +++ b/frontend/.env.local @@ -0,0 +1,4 @@ +# will be used in local development only: +BACKEND_URL=http://127.0.0.1:8000 + +# NOTE! this file is not ignored by git so please don't put any sensitive information here \ No newline at end of file diff --git a/frontend/.gitignore b/frontend/.gitignore index c4fc8df..e3397e4 100644 --- a/frontend/.gitignore +++ b/frontend/.gitignore @@ -25,7 +25,7 @@ yarn-debug.log* yarn-error.log* # local env files -.env*.local +# .env*.local yarn.lock # vercel diff --git a/frontend/next.config.js b/frontend/next.config.js index d9e5ae2..f50e338 100644 --- a/frontend/next.config.js +++ b/frontend/next.config.js @@ -1,20 +1,19 @@ /** @type {import('next').NextConfig} */ const nextConfig = { rewrites: async () => { + const backendUrl = process.env.BACKEND_URL || 'http://backend-service:8000'; return [ { - // maps req made to /api/* (from fe container) to backend-service:8000/api/* (in be container) source: "/api/:path*", - destination: "http://backend-service:8000/api/:path*" + destination: `${backendUrl}/api/:path*` }, - // both gke and docker-compose have the same name for the backend service { source: "/docs", - destination: "http://backend-service:8000/docs" + destination: `${backendUrl}/docs` }, { source: "/openapi.json", - destination: "http://backend-service:8000/openapi.json" + destination: `${backendUrl}/openapi.json` }, ]; },