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DeepRank

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  1. deeprank deeprank Public archive

    This repository has been integrated in https://github.com/DeepRank/deeprank2

    Python 147 27

  2. iScore iScore Public

    iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

    Python 26 11

  3. pdb2sql pdb2sql Public

    Fast and versatile biomolecular structure PDB file parser using SQL queries

    Python 24 12

  4. h5xplorer h5xplorer Public

    A customizable HDF5 browser with iPython console embbeded

    Python 5 2

  5. PSSMGen PSSMGen Public

    Generates consistent PSSM and/or PDB files for protein-protein complexes

    Python 18 5

  6. deeprank2 deeprank2 Public

    An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

    Python 40 10

Repositories

Showing 10 of 19 repositories
  • 3D-Vac Public

    Personalized cancer vaccine design through 3D modelling boosted geometric learning.

    DeepRank/3D-Vac’s past year of commit activity
    Jupyter Notebook 3 Apache-2.0 0 6 1 Updated Sep 20, 2024
  • deeprank2 Public

    An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

    DeepRank/deeprank2’s past year of commit activity
    Python 40 Apache-2.0 10 24 2 Updated Sep 17, 2024
  • h5xplorer Public

    A customizable HDF5 browser with iPython console embbeded

    DeepRank/h5xplorer’s past year of commit activity
    Python 5 Apache-2.0 2 1 1 Updated Sep 3, 2024
  • DeepRank-GNN-esm Public

    Graph Network for protein-protein interface including language model features

    DeepRank/DeepRank-GNN-esm’s past year of commit activity
    Python 25 Apache-2.0 10 2 0 Updated Mar 26, 2024
  • Deeprank-GNN Public archive

    Graph Network for protein-protein interface

    DeepRank/Deeprank-GNN’s past year of commit activity
    Python 117 Apache-2.0 32 3 0 Updated Mar 22, 2024
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    DeepRank/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 5,002 0 0 Updated Mar 6, 2024
  • pdbprep Public

    preprocess PDB files for deeprankcore

    DeepRank/pdbprep’s past year of commit activity
    Python 4 Apache-2.0 1 4 1 Updated Feb 5, 2024
  • DeepRank-Mut Public archive

    Deep learning framework to predict functional effects of missense variants in human

    DeepRank/DeepRank-Mut’s past year of commit activity
    Python 1 Apache-2.0 0 4 3 Updated Jan 26, 2024
  • deeprank Public archive

    This repository has been integrated in https://github.com/DeepRank/deeprank2

    DeepRank/deeprank’s past year of commit activity
    Python 147 Apache-2.0 27 74 (1 issue needs help) 0 Updated Nov 28, 2023
  • pdb2sql Public

    Fast and versatile biomolecular structure PDB file parser using SQL queries

    DeepRank/pdb2sql’s past year of commit activity
    Python 24 Apache-2.0 12 7 0 Updated Mar 17, 2023
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