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i18 xrf Notebook

This notebook is used to perform xrf processing of i18 data. This repo follows the bookshelf structure, meaning it will be automatically deployed in two varieties:

  1. An interactive - jupyterlab - environment, for running both locally and hosted on the hosted JupyterLab instance
  2. A headless processing image, for running both locally and as a cluster job

Releasing a version

Simply "create a release" on github, this will run a set of continious integration (CI) jobs defined in .github/workflows to generate the nessacary containers.

To update the versions available via the diamond module system, run the Project General installation jenkins job for the "bookshelf" package; This will query the GitHub API and catalogue all containers in the DiamondLightSource repository with the nessacary metadata.

Running the Containers

Interactive (local)

podman run --publish 8888:8888 ghcr.io/diamondlightsource/bookshelf-template/interactive:latest

or

module load bookshelf/bookshelf-i18-xrf/latest
bookshelf-i18-xrf-interactive

Interactive (hosted)

  1. Go to https://jupyterhub.diamond.ac.uk/hub/home
  2. 'Start My Server' with CONTAINER_IMAGE=ghcr.io/diamondlightsource/bookshelf-i18-xrf/interactive:latest

Processing

podman run --volume .:/outputs --volume .:/inputs --security-opt=label=type:container_runtime_t ghcr.io/diamondlightsource/bookshelf-template/processing:latest

or

module load bookshelf/bookshelf-i18-xrf/latest
bookshelf-i18-xrf-processing