test.yaml

name: Testing

on: [push, pull_request]


jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.8, 3.9, "3.10"]

    steps:
    - uses: actions/checkout@v2
    - name: 🐍 - Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}

    - name: 🔧 - Install Dependencies
      run: |
        pip install -r requirements-test.txt
        python setup.py sdist bdist_wheel
        TARGZ=$(ls dist/mg-toolkit*.tar.gz)
        pip install -U $TARGZ

    - name: 🍦 - Ruff
      continue-on-error: true
      run: |
        ruff --version
        ruff check  --statistics --verbose

    - name: 🧪 - Testing
      working-directory: tests
      run: |
        bash run_tests.sh

    - name: 📮 - Slack Notification
      uses: rtCamp/action-slack-notify@v2
      continue-on-error: true
      if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/develop'
      env:
        SLACK_COLOR: "${{ job.status == 'success' && 'good' || 'danger' }}"
        SLACK_USERNAME: "Github Actions API"
        SLACK_ICON_EMOJI: ":octocat:"
        SLACK_TITLE: "CI emg-toolkit results in GitHub Actions"
        SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
        SLACK_CHANNEL: "#metagenomics-notify"
        MSG_MINIMAL: Actions URL