diff --git a/src/ontology/duo-edit.owl b/src/ontology/duo-edit.owl index bd4d7aa..9f70a7b 100644 --- a/src/ontology/duo-edit.owl +++ b/src/ontology/duo-edit.owl @@ -202,6 +202,7 @@ no restriction This consent code primary category indicates there is no restriction on use. DUO:0000004 + 20180907, Meeting Moran Melanie: This is to be thought about more carefully - what is the intent when using 'no restriction' as usually users still need to be researchers. Note: the NRES alternative term may be confusing as in the UK it also stands for National Research Ethics Service no restriction @@ -212,10 +213,11 @@ - general research use and clinical care - This primary category consent code indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry. + general research use + This primary category consent code indicates that use is allowed for general research use for any research purpose. DUO:0000005 - general research use and clinical care + This includes but is not limited to: health/medical/biomedical purposes, fundamental biology research, the study of population origins or ancestry, statistical methods and algorithms development, and social-sciences research. + general research use @@ -223,12 +225,11 @@ - - health/medical/biomedical research and clinical care + + health/medical/biomedical research This primary category consent code indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry. - health medical biomedical research and clinical care DUO:0000006 - health or medical or biomedical research and clinical care + health or medical or biomedical research @@ -236,17 +237,18 @@ - + - disease-specific research and clinical care + disease-specific research This primary category consent code indicates that use is allowed provided it is related to the specified disease. DUO:0000007 - disease specific research and clinical care + This term should be coupled with a term describing a disease from an ontology, such as the Disease Ontology, HPO, MonDO to specify the disease the restriction applies to. + disease specific research @@ -254,7 +256,7 @@ - + population origins or ancestry research This primary category consent code indicates that use of the data is limited to the study of population origins or ancestry. population origins/ancestry research @@ -335,8 +337,10 @@ not-for-profit use only - This requirement indicates that use is limited to not-for-profit organizations. + This requirement indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use. + non-commercial use DUO:0000018 + NPU not for profit use only @@ -349,6 +353,7 @@ publication required This requirement indicates that requestor agrees to make results of studies using the data available to the larger scientific community. DUO:0000019 + PUB publication required @@ -361,6 +366,8 @@ collaboration required This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s). DUO:0000020 + COL + This could be coupled with a string describing the primary study investigator(s). collaboration required @@ -373,6 +380,7 @@ ethics approval required This requirement indicates that the requestor must provide documentation of local IRB/ERB approval. DUO:0000021 + IRB ethics approval required @@ -391,6 +399,8 @@ geographical restriction This requirement indicates that use is limited to within a specific geographic region. DUO:0000022 + GS-[XX] + This should be coupled with an ontology term describing the geographical location the restriction applies to. geographical restriction @@ -404,6 +414,8 @@ This requirement indicates that requestor agrees not to publish results of studies until a specific date publication embargo DUO:0000024 + MOR-[XX] + This should be coupled with a date specified as ISO8601 publication moratorium @@ -416,6 +428,8 @@ time limit on use This requirement indicates that use is approved for a specific number of months. DUO:0000025 + TS-[XX] + This should be coupled with an integer value indicating the number of months. time limit on use @@ -428,6 +442,7 @@ user-specific restriction This requirement indicates that use is limited to use by approved users. DUO:0000026 + US user specific restriction @@ -440,6 +455,7 @@ project-specific restriction This requirement indicates that use is limited to use within an approved project. DUO:0000027 + PS project specific restriction @@ -452,6 +468,7 @@ institution-specific restriction This requirement indicates that use is limited to use within an approved institution. DUO:0000028 + IS institution specific restriction @@ -489,9 +506,9 @@ population research An investigation concerning a specific population group. - Should be paired with the an ontology term representing this population (e.g., xxx). This definition is a placeholder as a result of meetings at ICBO2018. DUO_0000032 + Should be paired with the an ontology term representing this population (e.g., xxx). population research @@ -516,9 +533,9 @@ age category research An investigation concerning specific age categories. - Should be paired with the an ontology term representing this population (e.g., xxx). This definition is a placeholder as a result of meetings at ICBO2018. DUO_0000034 + Should be paired with the an ontology term representing this population (e.g., xxx). age category research @@ -530,9 +547,9 @@ gender category research An investigation concerning specific gender categories. - Should be paired with the an ontology term representing this population (e.g., xxx). This definition is a placeholder as a result of meetings at ICBO2018. DUO_0000035 + Should be paired with the an ontology term representing this population (e.g., xxx). gender category research @@ -595,7 +612,7 @@ disease category research - Biomedical research concerning specific a disease or diseases. + Biomedical research research concerning specific disease/s This definition is a placeholder as a result of meetings at ICBO2018. DUO_0000040 disease category research