From bcb2d52df87b65e817e7b1bfd1c95dbcc102045b Mon Sep 17 00:00:00 2001 From: Arwa Ibrahim <97462656+ar-ibrahim@users.noreply.github.com> Date: Tue, 14 May 2024 14:58:55 +0100 Subject: [PATCH] Added 'response to' term --- efo-base.owl | 54 +++++++++++++++++++++++++-------------- src/ontology/efo-edit.owl | 9 ++++++- 2 files changed, 43 insertions(+), 20 deletions(-) diff --git a/efo-base.owl b/efo-base.owl index 19ff8423..9a4dfe43 100644 --- a/efo-base.owl +++ b/efo-base.owl @@ -24495,7 +24495,7 @@ label: abdominal cavity lymphoblastic leukemia, acute - MONDO:patterns/acute + MONDO:patterns/acute @@ -24986,7 +24986,7 @@ label: abdominal cavity monocytic leukemia, acute - MONDO:patterns/acute + MONDO:patterns/acute @@ -25622,7 +25622,7 @@ label: abdominal cavity myeloid leukemia, acute - MONDO:patterns/acute + MONDO:patterns/acute @@ -114681,7 +114681,7 @@ A Jiyoye is bearer of a Burkitt's lymphoma. neoplasm (disease), benign - MONDO:patterns/benign + MONDO:patterns/benign @@ -397976,15 +397976,15 @@ to hypernasality and abnormal speech reduction. GARD:16281 MONDO:0060714 OMIM:617993 - tumoral calcinosis, hyperphosphatemic, familial, 2 + tumoral calcinosis, hyperphosphatemic, familial, 2 HFTC2 - tumoral calcinosis, hyperphosphatemic, familial, 2 + tumoral calcinosis, hyperphosphatemic, familial, 2 EFO:0009383 - tumoral calcinosis, hyperphosphatemic, familial, 2 + tumoral calcinosis, hyperphosphatemic, familial, 2 @@ -398008,19 +398008,19 @@ to hypernasality and abnormal speech reduction. - tumoral calcinosis, hyperphosphatemic, familial, 2 + tumoral calcinosis, hyperphosphatemic, familial, 2 OMIM:617993 - tumoral calcinosis, hyperphosphatemic, familial, 2 + tumoral calcinosis, hyperphosphatemic, familial, 2 Mondo preferred label 15.08.2021. - tumoral calcinosis, hyperphosphatemic, familial, 2 + tumoral calcinosis, hyperphosphatemic, familial, 2 preferred label from MONDO @@ -398033,7 +398033,7 @@ to hypernasality and abnormal speech reduction. - tumoral calcinosis, hyperphosphatemic, familial, 2 + tumoral calcinosis, hyperphosphatemic, familial, 2 OMIM:617993 @@ -543507,6 +543507,22 @@ Smart-seq3 is a continuation and improvement of the Smart-seq technology, specif + + + + + A trait that affects the response to a stimulus with traditional medicine products. + trait in response to traditional medicine + + + + + A trait that affects the response to a stimulus with traditional medicine products. + PMID:36583370 + + + + @@ -546004,7 +546020,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu ependymoma, benign - MONDO:patterns/benign + MONDO:patterns/benign @@ -546035,7 +546051,7 @@ A syndrome typically consisting of angina (cardiac chest pain) at rest that occu ependymoma, benign - MONDO:patterns/benign + MONDO:patterns/benign @@ -551086,7 +551102,7 @@ Label : Disorder of carbohydrate metabolism lactase persistence - OMIM:223100 + OMIM:223100 @@ -558017,7 +558033,7 @@ Label : Disorder of carbohydrate metabolism adrenal gland pheochromocytoma, benign - MONDO:patterns/benign + MONDO:patterns/benign @@ -558310,7 +558326,7 @@ Label : Disorder of carbohydrate metabolism carotid body paraganglioma, benign - MONDO:patterns/benign + MONDO:patterns/benign @@ -595867,7 +595883,7 @@ Label : malignant epithelioid mesothelioma sarcoma of mast cell - MONDO:patterns/sarcoma + MONDO:patterns/sarcoma @@ -612115,7 +612131,7 @@ Use: http://www.ebi.ac.uk/efo/EFO_0000197 Label: mucinous carcinoma pleural mesothelioma (disease), benign - MONDO:patterns/benign + MONDO:patterns/benign @@ -694395,7 +694411,7 @@ Label: Moebius syndrome pulmonary sulcus neoplasm, malignant - MONDO:patterns/malignant + MONDO:patterns/malignant diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl index 5b1a1c5e..3592d51e 100644 --- a/src/ontology/efo-edit.owl +++ b/src/ontology/efo-edit.owl @@ -20998,6 +20998,7 @@ Declaration(Class(efo:EFO_0803685)) Declaration(Class(efo:EFO_0803686)) Declaration(Class(efo:EFO_0803687)) Declaration(Class(efo:EFO_0803688)) +Declaration(Class(efo:EFO_0803689)) Declaration(Class(efo:EFO_1000003)) Declaration(Class(efo:EFO_1000012)) Declaration(Class(efo:EFO_1000013)) @@ -29554,7 +29555,7 @@ AnnotationAssertion(rdfs:label obo:RO_0001025 "located_in") AnnotationAssertion(rdfs:label obo:RO_0002104 "has_plasma_membrane_part") -# Object Property: obo:RO_0002160 (only in taxon) +# Object Property: obo:RO_0002160 (only_in_taxon) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:20973947") obo:IAO_0000115 obo:RO_0002160 "S only_in_taxon T iff: S SubClassOf in_taxon only T") AnnotationAssertion(oboInOwl:hasDbXref obo:RO_0002160 "RO:0002160") @@ -237350,6 +237351,12 @@ AnnotationAssertion(rdfs:comment efo:EFO_0803688 "Review for potential replaceme AnnotationAssertion(rdfs:label efo:EFO_0803688 "SARS coronavirus seropositivity") SubClassOf(efo:EFO_0803688 efo:EFO_0803595) +# Class: efo:EFO_0803689 (trait in response to traditional medicine) + +AnnotationAssertion(Annotation(efo:definition_citation "PMID:36583370") obo:IAO_0000115 efo:EFO_0803689 "A trait that affects the response to a stimulus with traditional medicine products.") +AnnotationAssertion(rdfs:label efo:EFO_0803689 "trait in response to traditional medicine"@en) +SubClassOf(efo:EFO_0803689 obo:GO_0009410) + # Class: efo:EFO_1000003 (Zinc deficiency) AnnotationAssertion(obo:IAO_0000115 efo:EFO_1000003 "A deficiency of the essential metal Zinc; an essential cofactor for many enzymes. Zinc deficiency is caused by a lack of zinc in the diet, loss of zinc after absorption, for example through loss through burns, inability to absorb Zinc, or increased loss through exercise. ")