From 608c115f7c8e1c89648b4297beb6cd6537b2fae0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Karatu=C4=9F=20Ozan=20Bircan?= Date: Mon, 15 Apr 2024 11:10:49 +0100 Subject: [PATCH] fix: Increase mem and time constraints for validation (#315) --- workflows/process_submission.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/workflows/process_submission.nf b/workflows/process_submission.nf index a29e990..d8f3071 100644 --- a/workflows/process_submission.nf +++ b/workflows/process_submission.nf @@ -36,8 +36,8 @@ process get_submitted_files { queue 'datamover' containerOptions "--bind $params.storePath" containerOptions "--bind $params.depo_data" - memory { 2.GB } - time { 2.hour * task.attempt } + memory { 4.GB } + time { 4.hour * task.attempt } maxRetries 5 errorStrategy { task.exitStatus in 130..255 ? 'retry' : 'terminate' } @@ -57,8 +57,8 @@ process validate_study { queue 'short' containerOptions "--bind $params.storePath" - memory { 4.GB * task.attempt } - time { 2.hour * task.attempt } + memory { 8.GB * task.attempt } + time { 4.hour * task.attempt } maxRetries 5 errorStrategy { task.exitStatus in 130..255 ? 'retry' : 'terminate' }