From a4f56c8e3cefa25cf1c9bca3502d766d985a3fb1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Karatu=C4=9F=20Ozan=20Bircan?= <karatugo@ebi.ac.uk>
Date: Wed, 26 Jun 2024 15:20:42 +0100
Subject: [PATCH] build: Update requirements (#351)

Our Celery v4.3.0 had the invalid (pytz(>dev)) requirment, so update Celery and their requirements. For details, see https://github.com/pypa/pip/issues/12063
---
 requirements.txt | 23 ++++++++++++++---------
 1 file changed, 14 insertions(+), 9 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 0950200..c0a5bfc 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,21 +1,24 @@
-amqp==2.5.0
+amqp==5.2.0
 appnope==0.1.3
 asttokens==2.2.1
 atomicwrites==1.3.0
 attrs==22.2.0
 backcall==0.2.0
 bcrypt==3.1.7
-billiard==3.6.0.0
+billiard==4.2.0
 black==23.1.0
 blinker==1.6.3
 bsub==0.3.5
 cachetools==5.3.0
-celery==4.3.0
+celery==5.4.0
 certifi==2022.12.7
 cffi==1.15.1
 chardet==5.1.0
 charset-normalizer==3.0.1
 click==8.1.3
+click-didyoumean==0.3.1
+click-plugins==1.1.1
+click-repl==0.3.0
 colorama==0.4.6
 commonmark==0.9.1
 coverage==4.5.3
@@ -51,7 +54,7 @@ jedi==0.18.2
 Jinja2==3.1.2
 jmespath==1.0.1
 jsonschema==4.17.3
-kombu==4.6.3
+kombu==5.3.7
 linecache2==1.0.0
 marko==1.3.0
 MarkupSafe==2.1.2
@@ -64,7 +67,7 @@ numpy==1.24.2
 openpyxl==3.0.10
 packaging==23.0
 pamqp==2.3.0
-pandas
+pandas==1.5.3
 pandera==0.13.4
 paramiko==2.6.0
 parso==0.8.3
@@ -87,11 +90,11 @@ pydantic==1.10.5
 Pygments==2.14.0
 PyJWT==2.6.0
 pymongo==4.3.3
-PyNaCl
+PyNaCl==1.5.0
 pyparsing==2.4.0
 pyproject_api==1.5.0
 pyrsistent==0.19.3
-pytest
+pytest==7.4.4
 pytest-cov==2.7.1
 pytest-mock==3.10.0
 python-dateutil==2.8.2
@@ -105,7 +108,8 @@ requests==2.28.2
 requests-mock==1.6.0
 rfc3986==2.0.0
 rich==12.6.0
-ruamel.yaml
+ruamel.yaml==0.17.32
+ruamel.yaml.clib==0.2.8
 shellingham==1.5.0.post1
 shortuuid==0.5.0
 simpleeval==0.9.13
@@ -126,10 +130,11 @@ traitlets==5.9.0
 typer==0.7.0
 typing-inspect==0.8.0
 typing_extensions==4.5.0
+tzdata==2024.1
 unittest2==1.1.0
 urllib3==1.26.14
 validators==0.20.0
-vine==1.3.0
+vine==5.1.0
 virtualenv==20.19.0
 wcwidth==0.1.7
 Werkzeug==2.2.3