From f2554b3ab210491e19e0e24caa9e3072c4f60c9b Mon Sep 17 00:00:00 2001 From: haider Date: Thu, 31 Oct 2024 11:43:42 +0000 Subject: [PATCH] Update testcases normal and api --- .../ebi/ols/apitester/RecursiveJsonDiff.java | 5 +- .../gitIssue502/ontologies.json | 4 +- .../gitIssue502/ontologies_linked.json | 20 +-- testcases_expected_output/duo/classes.jsonl | 16 +- testcases_expected_output/duo/duo_classes.csv | 16 +- .../duo/duo_properties.csv | 6 +- testcases_expected_output/duo/ontologies.json | 16 +- .../duo/ontologies_linked.json | 28 ++-- .../duo/properties.jsonl | 6 +- ...efo-hierarchical-properties_properties.csv | 14 +- .../efo/ontologies.json | 10 +- .../efo/ontologies_linked.json | 14 +- .../efo/properties.jsonl | 14 +- .../partof/classes.jsonl | 4 +- .../partof/ontologies.json | 2 +- .../partof/ontologies.jsonl | 2 +- .../partof/ontologies_linked.json | 8 +- .../partof/partof_classes.csv | 4 +- .../partof/partof_ontologies.csv | 2 +- .../partof/partof_properties.csv | 2 +- .../partof/properties.jsonl | 2 +- .../ontologies.json | 2 +- .../ontologies_linked.json | 8 +- .../reification/reified-bnode/classes.jsonl | 4 +- .../reification/reified-bnode/ontologies.json | 4 +- .../reified-bnode/ontologies_linked.json | 10 +- .../reified-bnode/properties.jsonl | 2 +- .../reified-bnode/reified-bnode_classes.csv | 4 +- .../reified-bnode_properties.csv | 2 +- testcases_expected_output_api/ontologies.json | 94 ++++++++++++ .../v2/ontologies.json | 138 ++++++------------ .../v2/ontologies/duo/classes.json | 22 +-- .../v2/ontologies/duo/entities.json | 28 ++-- .../v2/ontologies/duo/properties.json | 6 +- .../efo-hierarchical-properties/entities.json | 14 +- .../properties.json | 14 +- .../v2/ontologies/gitissue502/classes.json | 16 +- .../v2/ontologies/gitissue502/entities.json | 20 +-- .../v2/ontologies/gitissue502/properties.json | 4 +- .../v2/ontologies/partof/classes.json | 4 +- .../v2/ontologies/partof/entities.json | 6 +- .../v2/ontologies/partof/properties.json | 2 +- .../v2/ontologies/reified-bnode/classes.json | 8 +- .../v2/ontologies/reified-bnode/entities.json | 10 +- .../ontologies/reified-bnode/properties.json | 2 +- .../v2/ontologies/xmpl/classes.json | 4 +- 46 files changed, 335 insertions(+), 288 deletions(-) diff --git a/apitester4/src/main/java/uk/ac/ebi/ols/apitester/RecursiveJsonDiff.java b/apitester4/src/main/java/uk/ac/ebi/ols/apitester/RecursiveJsonDiff.java index f20fa4bdf..0890bc6c3 100644 --- a/apitester4/src/main/java/uk/ac/ebi/ols/apitester/RecursiveJsonDiff.java +++ b/apitester4/src/main/java/uk/ac/ebi/ols/apitester/RecursiveJsonDiff.java @@ -63,13 +63,10 @@ public boolean diff() throws FileNotFoundException { continue; } - if(jsonA.equals(jsonB)) { - System.out.println(inputDir + filename + " was equal to " + expectedDir + filename); - } else { + if(!jsonA.equals(jsonB)) { System.out.println(inputDir + filename + " differed from " + expectedDir + filename); success = false; } - } return success; diff --git a/testcases_expected_output/annotation-properties/gitIssue502/ontologies.json b/testcases_expected_output/annotation-properties/gitIssue502/ontologies.json index f7ccd6a6c..bff8dc4a9 100644 --- a/testcases_expected_output/annotation-properties/gitIssue502/ontologies.json +++ b/testcases_expected_output/annotation-properties/gitIssue502/ontologies.json @@ -78852,7 +78852,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "directAncestor": [], "hasDirectChildren": false, @@ -78908,7 +78908,7 @@ "type": [ "literal" ], - "value": "should:conform_to" + "value": "should_conform_to" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/annotation-properties/gitIssue502/ontologies_linked.json b/testcases_expected_output/annotation-properties/gitIssue502/ontologies_linked.json index e495b9982..b3c8c1396 100644 --- a/testcases_expected_output/annotation-properties/gitIssue502/ontologies_linked.json +++ b/testcases_expected_output/annotation-properties/gitIssue502/ontologies_linked.json @@ -76637,7 +76637,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "type": [ "property", @@ -84439,7 +84439,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "type": [ "property", @@ -86426,7 +86426,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "type": [ "property", @@ -91845,7 +91845,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "type": [ "property", @@ -100909,7 +100909,7 @@ "type": [ "literal" ], - "value": "should:conform_to" + "value": "should_conform_to" }, "type": [ "property", @@ -103239,7 +103239,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "type": [ "property", @@ -106019,7 +106019,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "type": [ "property", @@ -113652,7 +113652,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "type": [ "property", @@ -196156,7 +196156,7 @@ "type": [ "literal" ], - "value": "excluded:subClassOf" + "value": "excluded_subClassOf" }, "directAncestor": [], "hasDirectChildren": false, @@ -196217,7 +196217,7 @@ "type": [ "literal" ], - "value": "should:conform_to" + "value": "should_conform_to" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/duo/classes.jsonl b/testcases_expected_output/duo/classes.jsonl index e71bd9da3..2b4c8d9ee 100644 --- a/testcases_expected_output/duo/classes.jsonl +++ b/testcases_expected_output/duo/classes.jsonl @@ -1,9 +1,9 @@ -{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/APOLLO_SV_00000008\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"APOLLO:SV_00000008\"},\"definition\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"A planned process that has specified output a software product and that involves the creation of source code.\",\"lang\":\"en\"},\"definitionProperty\":{\"type\":[\"literal\"],\"value\":\"http://purl.obolibrary.org/obo/IAO_0000115\"},\"directAncestor\":[\"http://purl.obolibrary.org/obo/OBI_0000011\",\"http://purl.obolibrary.org/obo/BFO_0000015\",\"http://purl.obolibrary.org/obo/BFO_0000003\",\"http://purl.obolibrary.org/obo/BFO_0000001\"],\"directParent\":\"http://purl.obolibrary.org/obo/OBI_0000011\",\"hasDirectChildren\":true,\"hasDirectParents\":true,\"hasHierarchicalChildren\":true,\"hasHierarchicalParents\":true,\"hierarchicalAncestor\":[\"http://purl.obolibrary.org/obo/OBI_0000011\",\"http://purl.obolibrary.org/obo/BFO_0000015\",\"http://purl.obolibrary.org/obo/BFO_0000003\",\"http://purl.obolibrary.org/obo/BFO_0000001\"],\"hierarchicalParent\":\"http://purl.obolibrary.org/obo/OBI_0000011\",\"hierarchicalProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#subClassOf\"},\"http://purl.obolibrary.org/obo/IAO_0000115\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"A planned process that has specified output a software product and that involves the creation of source code.\",\"lang\":\"en\"},\"http://purl.obolibrary.org/obo/IAO_0000117\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Mathias Brochhausen\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"William R. 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(axiom label in BFO2 Reference: [001-001])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/001-001\"}]},\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"http://www.w3.org/2000/01/rdf-schema#isDefinedBy\":\"http://purl.obolibrary.org/obo/bfo.owl\",\"http://www.w3.org/2000/01/rdf-schema#label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"entity\",\"lang\":\"en\"},\"http://www.w3.org/2000/01/rdf-schema#subClassOf\":\"http://www.w3.org/2002/07/owl#Thing\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"entity\",\"lang\":\"en\"},\"numDescendants\":301.0,\"numHierarchicalDescendants\":283.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"duo\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://purl.obolibrary.org/obo/duo.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"DUO\"},\"relatedFrom\":{\"property\":\"http://purl.obolibrary.org/obo/IAO_0000136\",\"value\":\"http://purl.obolibrary.org/obo/IAO_0000030\",\"type\":[\"related\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://purl.obolibrary.org/obo/IAO_0000136\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://purl.obolibrary.org/obo/BFO_0000001\",\"isObsolete\":false},\"searchableAnnotationValues\":[{\"type\":[\"literal\"],\"value\":\"entity\"},{\"type\":[\"literal\"],\"value\":\"Entity\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Julius Caesar\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Verdi’s Requiem\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"the Second World War\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"your body mass index\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81\",\"lang\":\"en\"},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Entity doesn\\u0027t have a closure axiom because the subclasses don\\u0027t necessarily exhaust all possibilites. For example Werner Ceusters \\u0027portions of reality\\u0027 include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, \\u0027How to track absolutely everything\\u0027 at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/0000004\",\"http://www.w3.org/2000/01/rdf-schema#comment\":{\"type\":[\"literal\"],\"value\":\"per discussion with Barry Smith\"},\"http://www.w3.org/2000/01/rdf-schema#seeAlso\":\"http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/001-001\"}]},false],\"shortForm\":{\"type\":[\"literal\"],\"value\":\"BFO_0000001\"},\"isDefiningOntology\":false,\"appearsIn\":[\"duo\"],\"linkedEntities\":{\"http://purl.obolibrary.org/obo/IAO_0000030\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"information content entity\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000030\"},\"type\":[\"class\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000116\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"editor 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usage\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000112\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.w3.org/2000/01/rdf-schema#isDefinedBy\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"isDefinedBy\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"isDefinedBy\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0010000\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"has axiom label\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0010000\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000600\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"elucidation\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000600\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.w3.org/2000/01/rdf-schema#seeAlso\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"seeAlso\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"seeAlso\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.w3.org/2000/01/rdf-schema#comment\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"comment\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"comment\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000136\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"is 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all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81","Entity doesn\u0027t have a closure axiom because the subclasses don\u0027t necessarily exhaust all possibilites. For example Werner Ceusters \u0027portions of reality\u0027 include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, \u0027How to track absolutely everything\u0027 at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"],"http__//purl.obolibrary.org/obo/IAO_0000600":"An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","http__//www.w3.org/2000/01/rdf-schema#isDefinedBy":"http://purl.obolibrary.org/obo/bfo.owl","http__//www.w3.org/2000/01/rdf-schema#label":"entity","http__//www.w3.org/2000/01/rdf-schema#subClassOf":"http://www.w3.org/2002/07/owl#Thing","id":"duo+class+http://purl.obolibrary.org/obo/BFO_0000001","imported":"false","iri":"http://purl.obolibrary.org/obo/BFO_0000001","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"entity","numDescendants":"301.0","numHierarchicalDescendants":"283.0","ontologyId":"duo","ontologyIri":"http://purl.obolibrary.org/obo/duo.owl","ontologyPreferredPrefix":"DUO","relatedFrom":"http://purl.obolibrary.org/obo/IAO_0000030","searchableAnnotationValues":["entity","Entity","Julius Caesar","Verdi’s Requiem","the Second World War","your body mass index","BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81","Entity doesn\u0027t have a closure axiom because the subclasses don\u0027t necessarily exhaust all possibilites. For example Werner Ceusters \u0027portions of reality\u0027 include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, \u0027How to track absolutely everything\u0027 at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf","An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])","false"],"shortForm":"BFO_0000001","type":["class","entity"]} {"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/BFO_0000002\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000002\"},\"definition\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.\",\"lang\":\"en\"},\"definitionProperty\":{\"type\":[\"literal\"],\"value\":\"http://purl.obolibrary.org/obo/IAO_0000115\"},\"directAncestor\":\"http://purl.obolibrary.org/obo/BFO_0000001\",\"directParent\":\"http://purl.obolibrary.org/obo/BFO_0000001\",\"hasDirectChildren\":true,\"hasDirectParents\":true,\"hasHierarchicalChildren\":true,\"hasHierarchicalParents\":true,\"hierarchicalAncestor\":\"http://purl.obolibrary.org/obo/BFO_0000001\",\"hierarchicalParent\":\"http://purl.obolibrary.org/obo/BFO_0000001\",\"hierarchicalProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#subClassOf\"},\"http://purl.obolibrary.org/obo/BFO_0000179\":{\"type\":[\"literal\"],\"value\":\"continuant\"},\"http://purl.obolibrary.org/obo/BFO_0000180\":{\"type\":[\"literal\"],\"value\":\"Continuant\"},\"http://purl.obolibrary.org/obo/IAO_0000115\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.\",\"lang\":\"en\"},\"http://purl.obolibrary.org/obo/IAO_0000116\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. 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(axiom label in BFO2 Reference: [009-002])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/009-002\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. 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It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240\",\"lang\":\"en\"},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Continuant doesn\\u0027t have a closure axiom because the subclasses don\\u0027t necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster\\u0027s other portions of reality, questions are raised as to whether universals are continuants\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/0000007\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/008-002\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/126-001\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/009-002\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/011-002\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] \"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/009-002\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] \"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/126-001\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] 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The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write \\u0027spr[e]\\u0027 and `spl[e]\\u0027 respectively for the spread and spell of e, omitting mention of the frame.\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/0000012\"}]}],\"http://purl.obolibrary.org/obo/IAO_0000600\":{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/077-002\"}]},\"http://purl.obolibrary.org/obo/IAO_0000601\":[{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/108-001\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/079-001\"}]}],\"http://purl.obolibrary.org/obo/IAO_0000602\":[{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] \"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/108-001\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] \"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/079-001\"}]}],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"http://www.w3.org/2000/01/rdf-schema#isDefinedBy\":\"http://purl.obolibrary.org/obo/bfo.owl\",\"http://www.w3.org/2000/01/rdf-schema#label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"occurrent\",\"lang\":\"en\"},\"http://www.w3.org/2000/01/rdf-schema#subClassOf\":\"http://purl.obolibrary.org/obo/BFO_0000001\",\"http://www.w3.org/2002/07/owl#disjointWith\":{\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://purl.obolibrary.org/obo/BFO_0000002\",\"isObsolete\":false},\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"occurrent\",\"lang\":\"en\"},\"numDescendants\":34.0,\"numHierarchicalDescendants\":34.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"duo\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://purl.obolibrary.org/obo/duo.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"DUO\"},\"searchableAnnotationValues\":[{\"type\":[\"literal\"],\"value\":\"occurrent\"},{\"type\":[\"literal\"],\"value\":\"Occurrent\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"An entity that has temporal parts and that happens, unfolds or develops through time.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.\",\"lang\":\"en\"},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrent doesn\\u0027t have a closure axiom because the subclasses don\\u0027t necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/0000006\",\"http://www.w3.org/2000/01/rdf-schema#comment\":{\"type\":[\"literal\"],\"value\":\"per discussion with Barry Smith\"}}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by \\u0027spn[e]\\u0027 and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write \\u0027spr[e]\\u0027 and `spl[e]\\u0027 respectively for the spread and spell of e, omitting mention of the frame.\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/0000012\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/077-002\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/108-001\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])\",\"lang\":\"en\"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/079-001\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] \"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/108-001\"}]},{\"type\":[\"reification\"],\"value\":{\"type\":[\"literal\"],\"value\":\"(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] \"},\"axioms\":[{\"http://purl.obolibrary.org/obo/IAO_0010000\":\"http://purl.obolibrary.org/obo/bfo/axiom/079-001\"}]},false],\"shortForm\":{\"type\":[\"literal\"],\"value\":\"BFO_0000003\"},\"isDefiningOntology\":false,\"appearsIn\":[\"duo\"],\"linkedEntities\":{\"http://purl.obolibrary.org/obo/BFO_0000050\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part of\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000116\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"editor note\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000116\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000115\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"definition\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000115\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000179\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"BFO OWL specification label\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000179\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.w3.org/2000/01/rdf-schema#isDefinedBy\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"isDefinedBy\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"isDefinedBy\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0010000\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"has axiom label\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0010000\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000600\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"elucidation\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000600\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000001\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"entity\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000001\"},\"type\":[\"class\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000601\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"has associated axiom(nl)\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000601\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000002\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"continuant\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000002\"},\"type\":[\"class\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000602\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"has associated axiom(fol)\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000602\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.w3.org/2000/01/rdf-schema#comment\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"comment\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"comment\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000180\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"BFO CLIF specification label\",\"lang\":\"en\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000180\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.w3.org/2000/01/rdf-schema#label\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"label\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"label\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]}}}","appearsIn":["duo"],"curie":"BFO:0000003","definition":"An entity that has temporal parts and that happens, unfolds or develops through time.","definitionProperty":"http://purl.obolibrary.org/obo/IAO_0000115","directAncestor":"http://purl.obolibrary.org/obo/BFO_0000001","directParent":"http://purl.obolibrary.org/obo/BFO_0000001","hasDirectChildren":"true","hasDirectParents":"true","hasHierarchicalChildren":"true","hasHierarchicalParents":"true","hierarchicalAncestor":"http://purl.obolibrary.org/obo/BFO_0000001","hierarchicalParent":"http://purl.obolibrary.org/obo/BFO_0000001","hierarchicalProperty":"http://www.w3.org/2000/01/rdf-schema#subClassOf","http__//purl.obolibrary.org/obo/BFO_0000179":"occurrent","http__//purl.obolibrary.org/obo/BFO_0000180":"Occurrent","http__//purl.obolibrary.org/obo/IAO_0000115":"An entity that has temporal parts and that happens, unfolds or develops through time.","http__//purl.obolibrary.org/obo/IAO_0000116":["BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region","BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.","Occurrent doesn\u0027t have a closure axiom because the subclasses don\u0027t necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.","Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by \u0027spn[e]\u0027 and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write \u0027spr[e]\u0027 and `spl[e]\u0027 respectively for the spread and spell of e, omitting mention of the frame."],"http__//purl.obolibrary.org/obo/IAO_0000600":"An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])","http__//purl.obolibrary.org/obo/IAO_0000601":["Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])","b is an occurrent entity iff b is an entity that has temporal parts. 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A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.","Occurrent doesn\u0027t have a closure axiom because the subclasses don\u0027t necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.","Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by \u0027spn[e]\u0027 and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write \u0027spr[e]\u0027 and `spl[e]\u0027 respectively for the spread and spell of e, omitting mention of the frame.","An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])","Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])","b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])","(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] ","(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] ","false"],"shortForm":"BFO_0000003","type":["class","entity"]} @@ -95,7 +95,7 @@ {"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/IAO_0000019\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000019\"},\"definition\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text 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information_content_entity \\u0027is_encoded_in\\u0027 some physical_document in obi before split (040907).\\n\\nPrevious. 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graphs.","http__//purl.obolibrary.org/obo/IAO_0000114":"http://purl.obolibrary.org/obo/IAO_0000122","http__//purl.obolibrary.org/obo/IAO_0000115":"A generically dependent continuant that is about some thing.","http__//purl.obolibrary.org/obo/IAO_0000116":["2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).","information_content_entity \u0027is_encoded_in\u0027 some digital_entity in obi before split (040907). information_content_entity \u0027is_encoded_in\u0027 some physical_document in obi before split (040907).\n\nPrevious. An information content entity is a non-realizable information entity that \u0027is encoded in\u0027 some digital or physical entity."],"http__//purl.obolibrary.org/obo/IAO_0000117":"PERSON: Chris Stoeckert","http__//purl.obolibrary.org/obo/IAO_0000119":"OBI_0000142","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","http__//www.w3.org/2000/01/rdf-schema#label":"information content entity","http__//www.w3.org/2000/01/rdf-schema#subClassOf":["http://purl.obolibrary.org/obo/BFO_0000031"],"id":"duo+class+http://purl.obolibrary.org/obo/IAO_0000030","imported":"false","iri":"http://purl.obolibrary.org/obo/IAO_0000030","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"information content entity","numDescendants":"229.0","numHierarchicalDescendants":"211.0","ontologyId":"duo","ontologyIri":"http://purl.obolibrary.org/obo/duo.owl","ontologyPreferredPrefix":"DUO","relatedFrom":["http://purl.obolibrary.org/obo/IAO_0000572","http://purl.obolibrary.org/obo/IAO_0000575","http://purl.obolibrary.org/obo/IAO_0000580","http://purl.obolibrary.org/obo/IAO_0000650","http://purl.obolibrary.org/obo/IAO_0000650"],"relatedTo":"http://purl.obolibrary.org/obo/BFO_0000001","searchableAnnotationValues":["information content entity","Examples of information content entites include journal articles, data, graphical layouts, and graphs.","A generically dependent continuant that is about some thing.","2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).","information_content_entity \u0027is_encoded_in\u0027 some digital_entity in obi before split (040907). information_content_entity \u0027is_encoded_in\u0027 some physical_document in obi before split (040907).\n\nPrevious. An information content entity is a non-realizable information entity that \u0027is encoded in\u0027 some digital or physical entity.","PERSON: Chris Stoeckert","OBI_0000142","false"],"shortForm":"IAO_0000030","type":["class","entity"]} @@ -117,7 +117,7 @@ {"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/IAO_0000088\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000088\"},\"definition\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).\",\"lang\":\"en\"},\"definitionProperty\":{\"type\":[\"literal\"],\"value\":\"http://purl.obolibrary.org/obo/IAO_0000115\"},\"directAncestor\":[\"http://purl.obolibrary.org/obo/IAO_0000310\",\"http://purl.obolibrary.org/obo/IAO_0000030\",\"http://purl.obolibrary.org/obo/BFO_0000031\",\"http://purl.obolibrary.org/obo/BFO_0000002\",\"http://purl.obolibrary.org/obo/BFO_0000001\"],\"directParent\":\"http://purl.obolibrary.org/obo/IAO_0000310\",\"hasDirectChildren\":true,\"hasDirectParents\":true,\"hasHierarchicalChildren\":true,\"hasHierarchicalParents\":true,\"hierarchicalAncestor\":[\"http://purl.obolibrary.org/obo/IAO_0000310\",\"http://purl.obolibrary.org/obo/IAO_0000030\",\"http://purl.obolibrary.org/obo/BFO_0000031\",\"http://purl.obolibrary.org/obo/BFO_0000002\",\"http://purl.obolibrary.org/obo/BFO_0000001\"],\"hierarchicalParent\":\"http://purl.obolibrary.org/obo/IAO_0000310\",\"hierarchicalProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#subClassOf\"},\"http://purl.obolibrary.org/obo/IAO_0000111\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"report\",\"lang\":\"en\"},\"http://purl.obolibrary.org/obo/IAO_0000112\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Examples of reports are gene lists and investigation reports. These are not published (journal) articles but may be included in a journal article.\",\"lang\":\"en\"},\"http://purl.obolibrary.org/obo/IAO_0000114\":\"http://purl.obolibrary.org/obo/IAO_0000125\",\"http://purl.obolibrary.org/obo/IAO_0000115\":{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).\",\"lang\":\"en\"},\"http://purl.obolibrary.org/obo/IAO_0000116\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"2009-03-16: comment from Darren Natale: I am slightly uneasy with the sentence \\\"Topic of the report is on \\nsomething that has completed.\\\" Should it be restricted to those things \\nthat are completed? For example, a progress report is (usually) about \\nsomething that definitely has *not* been completed, or may include \\n(only) projections. I think the definition would not suffer if the \\nwhole sentence is deleted.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"2009-03-16: this was report of results with definition: A report is a narrative object that is a formal statement of the results of an investigation, or of any matter on which definite information is required, made by some person or body instructed or required to do so.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. 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It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240|Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants","","","An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.","continuant","","","","","","","","http://purl.obolibrary.org/obo/bfo.owl","","265.0","","","http://purl.obolibrary.org/obo/BFO_0000001","http://purl.obolibrary.org/obo/BFO_0000001","http://purl.obolibrary.org/obo/BFO_0000003|","A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])","if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])|if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])|if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. 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A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."",""lang"":""en""},{""type"":[""reification""],""value"":{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrent doesn\u0027t have a closure axiom because the subclasses don\u0027t necessarily exhaust all possibilites. 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The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write \u0027spr[e]\u0027 and `spl[e]\u0027 respectively for the spread and spell of e, omitting mention of the frame.""},""axioms"":[{""http://purl.obolibrary.org/obo/IAO_0010000"":""http://purl.obolibrary.org/obo/bfo/axiom/0000012""}]}],""http://purl.obolibrary.org/obo/IAO_0000600"":{""type"":[""reification""],""value"":{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. 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A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."",""lang"":""en""},{""type"":[""reification""],""value"":{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrent doesn\u0027t have a closure axiom because the subclasses don\u0027t necessarily exhaust all possibilites. 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The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write \u0027spr[e]\u0027 and `spl[e]\u0027 respectively for the spread and spell of e, omitting mention of the frame.""},""axioms"":[{""http://purl.obolibrary.org/obo/IAO_0010000"":""http://purl.obolibrary.org/obo/bfo/axiom/0000012""}]},{""type"":[""reification""],""value"":{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. 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b/testcases_expected_output/duo/ontologies.json @@ -175,7 +175,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000008" + "value": "APOLLO_SV:00000008" }, "definition": { "type": [ @@ -372,7 +372,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000032" + "value": "APOLLO_SV:00000032" }, "definition": { "type": [ @@ -525,7 +525,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000033" + "value": "APOLLO_SV:00000033" }, "definition": { "type": [ @@ -686,7 +686,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000522" + "value": "APOLLO_SV:00000522" }, "definition": [ { @@ -918,7 +918,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000524" + "value": "APOLLO_SV:00000524" }, "definition": [ { @@ -1138,7 +1138,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000796" + "value": "APOLLO_SV:00000796" }, "definition": { "type": [ @@ -78590,7 +78590,7 @@ "type": [ "literal" ], - "value": "created:by" + "value": "created_by" }, "directAncestor": [], "hasDirectChildren": false, @@ -78646,7 +78646,7 @@ "type": [ "literal" ], - "value": "creation:date" + "value": "creation_date" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/duo/ontologies_linked.json b/testcases_expected_output/duo/ontologies_linked.json index d9ee425a5..d58e91bee 100644 --- a/testcases_expected_output/duo/ontologies_linked.json +++ b/testcases_expected_output/duo/ontologies_linked.json @@ -177,7 +177,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000008" + "value": "APOLLO_SV:00000008" }, "definition": { "type": [ @@ -653,7 +653,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000032" + "value": "APOLLO_SV:00000032" }, "definition": { "type": [ @@ -1017,7 +1017,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000033" + "value": "APOLLO_SV:00000033" }, "type": [ "class", @@ -1079,7 +1079,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000033" + "value": "APOLLO_SV:00000033" }, "definition": { "type": [ @@ -1457,7 +1457,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000032" + "value": "APOLLO_SV:00000032" }, "type": [ "class", @@ -1497,7 +1497,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000522" + "value": "APOLLO_SV:00000522" }, "definition": [ { @@ -2046,7 +2046,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000524" + "value": "APOLLO_SV:00000524" }, "definition": [ { @@ -2366,7 +2366,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000008" + "value": "APOLLO_SV:00000008" }, "type": [ "class", @@ -2583,7 +2583,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000796" + "value": "APOLLO_SV:00000796" }, "definition": { "type": [ @@ -49533,7 +49533,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000522" + "value": "APOLLO_SV:00000522" }, "type": [ "class", @@ -61396,7 +61396,7 @@ "type": [ "literal" ], - "value": "APOLLO:SV_00000522" + "value": "APOLLO_SV:00000522" }, "type": [ "class", @@ -174717,7 +174717,7 @@ "type": [ "literal" ], - "value": "created:by" + "value": "created_by" }, "type": [ "property", @@ -184244,7 +184244,7 @@ "type": [ "literal" ], - "value": "created:by" + "value": "created_by" }, "directAncestor": [], "hasDirectChildren": false, @@ -184305,7 +184305,7 @@ "type": [ "literal" ], - "value": "creation:date" + "value": "creation_date" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/duo/properties.jsonl b/testcases_expected_output/duo/properties.jsonl index 9fb9edd13..69a5d9f2a 100644 --- a/testcases_expected_output/duo/properties.jsonl +++ b/testcases_expected_output/duo/properties.jsonl @@ -69,7 +69,7 @@ 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a/testcases_expected_output/hierarchical-properties/efo/efo-hierarchical-properties_properties.csv b/testcases_expected_output/hierarchical-properties/efo/efo-hierarchical-properties_properties.csv index 72feffc7a..a2027cb62 100644 --- a/testcases_expected_output/hierarchical-properties/efo/efo-hierarchical-properties_properties.csv +++ b/testcases_expected_output/hierarchical-properties/efo/efo-hierarchical-properties_properties.csv @@ -1,10 +1,10 @@ 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-"efo-hierarchical-properties+property+http://purl.obolibrary.org/obo/BFO_0000050","OntologyEntity|OntologyProperty","{""iri"":""http://purl.obolibrary.org/obo/BFO_0000050"",""type"":[""property"",""objectProperty"",""entity""],""curie"":{""type"":[""literal""],""value"":""BFO:0000050""},""definition"":[{""type"":[""literal""],""value"":""For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)""},{""type"":[""literal""],""value"":""a core relation that holds between a part and its whole""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""a core relation that holds between a part and its whole"",""lang"":""en""},{""type"":[""literal""],""value"":""EFO_0000822""}],""definitionProperty"":[{""type"":[""literal""],""value"":""http://purl.obolibrary.org/obo/IAO_0000115""},{""type"":[""literal""],""value"":""http://www.w3.org/2000/01/rdf-schema#comment""}],""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""http://purl.obolibrary.org/obo/IAO_0000111"":[{""type"":[""literal""],""value"":""is part of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""is part of"",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000112"":[{""type"":[""literal""],""value"":""my brain is part of my body (continuant parthood, two material entities)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my brain is part of my body (continuant parthood, two material entities)"",""lang"":""en""},{""type"":[""literal""],""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"",""lang"":""en""},{""type"":[""literal""],""value"":""this day is part of this year (occurrent parthood)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""this day is part of this year (occurrent parthood)"",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000115"":[{""type"":[""literal""],""value"":""For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)""},{""type"":[""literal""],""value"":""a core relation that holds between a part and its whole""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""a core relation that holds between a part and its whole"",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000116"":[{""type"":[""literal""],""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."",""lang"":""en""},{""type"":[""literal""],""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"",""lang"":""en""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"",""lang"":""en""},{""type"":[""literal""],""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027."",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000118"":[{""type"":[""literal""],""value"":""part_of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""part_of"",""lang"":""en""}],""http://purl.obolibrary.org/obo/RO_0001900"":""http://purl.obolibrary.org/obo/RO_0001901"",""http://purl.obolibrary.org/obo/RO_0040042"":[""http://purl.obolibrary.org/obo/BFO_0000002"",""http://purl.obolibrary.org/obo/BFO_0000003"",""http://purl.obolibrary.org/obo/BFO_0000004"",""http://purl.obolibrary.org/obo/BFO_0000017"",""http://purl.obolibrary.org/obo/BFO_0000019"",""http://purl.obolibrary.org/obo/BFO_0000020"",""http://purl.obolibrary.org/obo/BFO_0000031""],""http://www.ebi.ac.uk/efo/EFO_URI"":{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/efo/part_of""},""http://www.geneontology.org/formats/oboInOwl#hasDbXref"":[{""type"":[""literal""],""value"":""BFO:0000050""},{""type"":[""literal""],""value"":""OBO_REL:part_of""}],""http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"":{""type"":[""literal""],""value"":""part of""},""http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"":[{""type"":[""literal""],""value"":""external""},{""type"":[""literal""],""value"":""human_stages_ontology""},{""type"":[""literal""],""value"":""protein""},{""type"":[""literal""],""value"":""quality""},{""type"":[""literal""],""value"":""relationship""},{""type"":[""literal""],""value"":""uberon""}],""http://www.geneontology.org/formats/oboInOwl#id"":{""type"":[""literal""],""value"":""part_of""},""http://www.geneontology.org/formats/oboInOwl#inSubset"":[""http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"",""http://purl.obolibrary.org/obo/valid_for_go_gp2term"",""http://purl.obolibrary.org/obo/valid_for_go_ontology"",""http://purl.obolibrary.org/obo/valid_for_gocam""],""http://www.geneontology.org/formats/oboInOwl#shorthand"":{""type"":[""literal""],""value"":""part_of""},""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":[""http://www.w3.org/2002/07/owl#ObjectProperty"",""http://www.w3.org/2002/07/owl#TransitiveProperty""],""http://www.w3.org/2000/01/rdf-schema#comment"":{""type"":[""literal""],""value"":""EFO_0000822""},""http://www.w3.org/2000/01/rdf-schema#label"":[{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""part of"",""lang"":""en""},{""type"":[""literal""],""value"":""part of""},{""type"":[""literal""],""value"":""part_of""}],""http://www.w3.org/2000/01/rdf-schema#seeAlso"":[""http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections"",""http://ontologydesignpatterns.org/wiki/Submissions:PartOf"",{""type"":[""literal""],""value"":""http://www.obofoundry.org/ro/#OBO_REL:part_of""}],""http://www.w3.org/2002/07/owl#inverseOf"":""http://purl.obolibrary.org/obo/BFO_0000051"",""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":[{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""part of"",""lang"":""en""},{""type"":[""literal""],""value"":""part of""},{""type"":[""literal""],""value"":""part_of""}],""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""efo-hierarchical-properties""},""ontologyIri"":{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/efo/efo.owl""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""efo-hierarchical-properties""},""searchableAnnotationValues"":[{""type"":[""literal""],""value"":""is part of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""is part of"",""lang"":""en""},{""type"":[""literal""],""value"":""my brain is part of my body (continuant parthood, two material entities)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my brain is part of my body (continuant parthood, two material entities)"",""lang"":""en""},{""type"":[""literal""],""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"",""lang"":""en""},{""type"":[""literal""],""value"":""this day is part of this year (occurrent parthood)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""this day is part of this year (occurrent parthood)"",""lang"":""en""},{""type"":[""literal""],""value"":""For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)""},{""type"":[""literal""],""value"":""a core relation that holds between a part and its whole""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""a core relation that holds between a part and its whole"",""lang"":""en""},{""type"":[""literal""],""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."",""lang"":""en""},{""type"":[""literal""],""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"",""lang"":""en""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"",""lang"":""en""},{""type"":[""literal""],""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027."",""lang"":""en""},{""type"":[""literal""],""value"":""part_of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""part_of"",""lang"":""en""},{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/efo/part_of""},{""type"":[""literal""],""value"":""BFO:0000050""},{""type"":[""literal""],""value"":""OBO_REL:part_of""},{""type"":[""literal""],""value"":""part of""},{""type"":[""literal""],""value"":""external""},{""type"":[""literal""],""value"":""human_stages_ontology""},{""type"":[""literal""],""value"":""protein""},{""type"":[""literal""],""value"":""quality""},{""type"":[""literal""],""value"":""relationship""},{""type"":[""literal""],""value"":""uberon""},false],""shortForm"":{""type"":[""literal""],""value"":""BFO_0000050""},""synonym"":{""type"":[""literal""],""value"":""part 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Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.|Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.|Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/|Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/|Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime|Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) +"efo-hierarchical-properties+property+http://purl.obolibrary.org/obo/BFO_0000050","OntologyEntity|OntologyProperty","{""iri"":""http://purl.obolibrary.org/obo/BFO_0000050"",""type"":[""property"",""objectProperty"",""entity""],""curie"":{""type"":[""literal""],""value"":""BFO:0000050""},""definition"":[{""type"":[""literal""],""value"":""For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)""},{""type"":[""literal""],""value"":""a core relation that holds between a part and its whole""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""a core relation that holds between a part and its whole"",""lang"":""en""},{""type"":[""literal""],""value"":""EFO_0000822""}],""definitionProperty"":[{""type"":[""literal""],""value"":""http://purl.obolibrary.org/obo/IAO_0000115""},{""type"":[""literal""],""value"":""http://www.w3.org/2000/01/rdf-schema#comment""}],""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""http://purl.obolibrary.org/obo/IAO_0000111"":[{""type"":[""literal""],""value"":""is part of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""is part of"",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000112"":[{""type"":[""literal""],""value"":""my brain is part of my body (continuant parthood, two material entities)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my brain is part of my body (continuant parthood, two material entities)"",""lang"":""en""},{""type"":[""literal""],""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"",""lang"":""en""},{""type"":[""literal""],""value"":""this day is part of this year (occurrent parthood)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""this day is part of this year (occurrent parthood)"",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000115"":[{""type"":[""literal""],""value"":""For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)""},{""type"":[""literal""],""value"":""a core relation that holds between a part and its whole""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""a core relation that holds between a part and its whole"",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000116"":[{""type"":[""literal""],""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."",""lang"":""en""},{""type"":[""literal""],""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"",""lang"":""en""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"",""lang"":""en""},{""type"":[""literal""],""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027."",""lang"":""en""}],""http://purl.obolibrary.org/obo/IAO_0000118"":[{""type"":[""literal""],""value"":""part_of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""part_of"",""lang"":""en""}],""http://purl.obolibrary.org/obo/RO_0001900"":""http://purl.obolibrary.org/obo/RO_0001901"",""http://purl.obolibrary.org/obo/RO_0040042"":[""http://purl.obolibrary.org/obo/BFO_0000002"",""http://purl.obolibrary.org/obo/BFO_0000003"",""http://purl.obolibrary.org/obo/BFO_0000004"",""http://purl.obolibrary.org/obo/BFO_0000017"",""http://purl.obolibrary.org/obo/BFO_0000019"",""http://purl.obolibrary.org/obo/BFO_0000020"",""http://purl.obolibrary.org/obo/BFO_0000031""],""http://www.ebi.ac.uk/efo/EFO_URI"":{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/efo/part_of""},""http://www.geneontology.org/formats/oboInOwl#hasDbXref"":[{""type"":[""literal""],""value"":""BFO:0000050""},{""type"":[""literal""],""value"":""OBO_REL:part_of""}],""http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"":{""type"":[""literal""],""value"":""part 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of""},{""type"":[""literal""],""value"":""part_of""}],""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""efo-hierarchical-properties""},""ontologyIri"":{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/efo/efo.owl""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""efo-hierarchical-properties""},""searchableAnnotationValues"":[{""type"":[""literal""],""value"":""is part of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""is part of"",""lang"":""en""},{""type"":[""literal""],""value"":""my brain is part of my body (continuant parthood, two material entities)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my brain is part of my body (continuant parthood, two material entities)"",""lang"":""en""},{""type"":[""literal""],""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"",""lang"":""en""},{""type"":[""literal""],""value"":""this day is part of this year (occurrent parthood)""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""this day is part of this year (occurrent parthood)"",""lang"":""en""},{""type"":[""literal""],""value"":""For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)""},{""type"":[""literal""],""value"":""a core relation that holds between a part and its whole""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""a core relation that holds between a part and its whole"",""lang"":""en""},{""type"":[""literal""],""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."",""lang"":""en""},{""type"":[""literal""],""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"",""lang"":""en""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"",""lang"":""en""},{""type"":[""literal""],""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027."",""lang"":""en""},{""type"":[""literal""],""value"":""part_of""},{""type"":[""literal""],""datatype"":""http://www.w3.org/1999/02/22-rdf-syntax-ns#langString"",""value"":""part_of"",""lang"":""en""},{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/efo/part_of""},{""type"":[""literal""],""value"":""BFO:0000050""},{""type"":[""literal""],""value"":""OBO_REL:part_of""},{""type"":[""literal""],""value"":""part of""},{""type"":[""literal""],""value"":""external""},{""type"":[""literal""],""value"":""human_stages_ontology""},{""type"":[""literal""],""value"":""protein""},{""type"":[""literal""],""value"":""quality""},{""type"":[""literal""],""value"":""relationship""},{""type"":[""literal""],""value"":""uberon""},false],""shortForm"":{""type"":[""literal""],""value"":""BFO_0000050""},""synonym"":{""type"":[""literal""],""value"":""part of""},""synonymProperty"":{""type"":[""literal""],""value"":""http://www.geneontology.org/formats/oboInOwl#hasExactSynonym""},""isDefiningOntology"":false,""appearsIn"":[""efo-hierarchical-properties""],""linkedEntities"":{""http://purl.obolibrary.org/obo/BFO_0000019"":{""url"":""http://purl.obolibrary.org/obo/BFO_0000019"",""source"":""https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml"",""curie"":""bfo:0000019""},""http://purl.obolibrary.org/obo/BFO_0000017"":{""url"":""http://purl.obolibrary.org/obo/BFO_0000017"",""source"":""https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml"",""curie"":""bfo:0000017""},""http://purl.obolibrary.org/obo/RO_0040042"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""RO_0040042""},""curie"":{""type"":[""literal""],""value"":""RO:0040042""},""type"":[""property"",""annotationProperty"",""entity""]},""http://www.geneontology.org/formats/oboInOwl#id"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""id""},""curie"":{""type"":[""literal""],""value"":""id""},""type"":[""property"",""annotationProperty"",""entity""]},""http://www.geneontology.org/formats/oboInOwl#inSubset"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""inSubset""},""curie"":{""type"":[""literal""],""value"":""inSubset""},""type"":[""property"",""annotationProperty"",""entity""]},""http://purl.obolibrary.org/obo/IAO_0000116"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""IAO_0000116""},""curie"":{""type"":[""literal""],""value"":""IAO:0000116""},""type"":[""property"",""annotationProperty"",""entity""]},""http://purl.obolibrary.org/obo/IAO_0000115"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""IAO_0000115""},""curie"":{""type"":[""literal""],""value"":""IAO:0000115""},""type"":[""property"",""annotationProperty"",""entity""]},""http://purl.obolibrary.org/obo/IAO_0000112"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""IAO_0000112""},""curie"":{""type"":[""literal""],""value"":""IAO:0000112""},""type"":[""property"",""annotationProperty"",""entity""]},""http://purl.obolibrary.org/obo/BFO_0000051"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":[{""type"":[""literal""],""value"":""has 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of","false","","BFO:0000050|OBO_REL:part_of","0.0","property|objectProperty|entity","http://purl.obolibrary.org/obo/BFO_0000002|http://purl.obolibrary.org/obo/BFO_0000003|http://purl.obolibrary.org/obo/BFO_0000004|http://purl.obolibrary.org/obo/BFO_0000017|http://purl.obolibrary.org/obo/BFO_0000019|http://purl.obolibrary.org/obo/BFO_0000020|http://purl.obolibrary.org/obo/BFO_0000031","http://purl.obolibrary.org/obo/BFO_0000051","http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","part_of","part of","part_of","http://purl.obolibrary.org/obo/IAO_0000115|http://www.w3.org/2000/01/rdf-schema#comment","http://purl.obolibrary.org/obo/valid_for_go_annotation_extension|http://purl.obolibrary.org/obo/valid_for_go_gp2term|http://purl.obolibrary.org/obo/valid_for_go_ontology|http://purl.obolibrary.org/obo/valid_for_gocam","false","external|human_stages_ontology|protein|quality|relationship|uberon","EFO_0000822","false","Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.|Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.|Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/|Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/|Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime|Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.|Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.","For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)|a core relation that holds between a part and its whole|a core relation that holds between a part and its whole|EFO_0000822","http://www.ebi.ac.uk/efo/efo.owl","For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)|a core relation that holds between a part and its whole|a core relation that holds between a part and its whole","my brain is part of my body (continuant parthood, two material entities)|my brain is part of my body (continuant parthood, two material entities)|my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)|my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)|this day is part of this year (occurrent parthood)|this day is part of this year (occurrent parthood)","is part of|is part of","http://purl.obolibrary.org/obo/BFO_0000050","part_of|part_of","0.0","false","part of|part of|part_of","http://www.ebi.ac.uk/efo/part_of","efo-hierarchical-properties","","http://purl.obolibrary.org/obo/RO_0001901","BFO:0000050","BFO_0000050","part of|part 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diff --git a/testcases_expected_output/hierarchical-properties/efo/ontologies.json b/testcases_expected_output/hierarchical-properties/efo/ontologies.json index bb255d48d..b15ea19d4 100644 --- a/testcases_expected_output/hierarchical-properties/efo/ontologies.json +++ b/testcases_expected_output/hierarchical-properties/efo/ontologies.json @@ -5169,7 +5169,7 @@ "type": [ "literal" ], - "value": "EFO:URI" + "value": "EFO_URI" }, "directAncestor": [], "hasDirectChildren": false, @@ -5225,7 +5225,7 @@ "type": [ "literal" ], - "value": "date:retrieved" + "value": "date_retrieved" }, "directAncestor": [], "hasDirectChildren": false, @@ -5281,7 +5281,7 @@ "type": [ "literal" ], - "value": "external:class" + "value": "external_class" }, "directAncestor": [], "hasDirectChildren": false, @@ -5337,7 +5337,7 @@ "type": [ "literal" ], - "value": "external:ontology" + "value": "external_ontology" }, "directAncestor": [], "hasDirectChildren": false, @@ -6121,7 +6121,7 @@ "type": [ "literal" ], - "value": "depicted:by" + "value": "depicted_by" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/hierarchical-properties/efo/ontologies_linked.json b/testcases_expected_output/hierarchical-properties/efo/ontologies_linked.json index 9be2f6168..7f93712ba 100644 --- a/testcases_expected_output/hierarchical-properties/efo/ontologies_linked.json +++ b/testcases_expected_output/hierarchical-properties/efo/ontologies_linked.json @@ -8754,7 +8754,7 @@ "type": [ "literal" ], - "value": "EFO:URI" + "value": "EFO_URI" }, "type": [ "property", @@ -9115,7 +9115,7 @@ "type": [ "literal" ], - "value": "EFO:URI" + "value": "EFO_URI" }, "type": [ "property", @@ -10234,7 +10234,7 @@ "type": [ "literal" ], - "value": "EFO:URI" + "value": "EFO_URI" }, "directAncestor": [], "hasDirectChildren": false, @@ -10295,7 +10295,7 @@ "type": [ "literal" ], - "value": "date:retrieved" + "value": "date_retrieved" }, "directAncestor": [], "hasDirectChildren": false, @@ -10356,7 +10356,7 @@ "type": [ "literal" ], - "value": "external:class" + "value": "external_class" }, "directAncestor": [], "hasDirectChildren": false, @@ -10417,7 +10417,7 @@ "type": [ "literal" ], - "value": "external:ontology" + "value": "external_ontology" }, "directAncestor": [], "hasDirectChildren": false, @@ -11271,7 +11271,7 @@ "type": [ "literal" ], - "value": "depicted:by" + "value": "depicted_by" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/hierarchical-properties/efo/properties.jsonl b/testcases_expected_output/hierarchical-properties/efo/properties.jsonl index 3913fd9e0..f92710b5d 100644 --- a/testcases_expected_output/hierarchical-properties/efo/properties.jsonl +++ b/testcases_expected_output/hierarchical-properties/efo/properties.jsonl @@ -1,5 +1,5 @@ -{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"definition\":[{\"type\":[\"literal\"],\"value\":\"For continuants: C part_of C\\u0027 if and only if: given any c that instantiates C at a time t, there is some c\\u0027 such that c\\u0027 instantiates C\\u0027 at time t, and c *part_of* c\\u0027 at t. For processes: P part_of P\\u0027 if and only if: given any p that instantiates P at a time t, there is some p\\u0027 such that p\\u0027 instantiates P\\u0027 at time t, and p *part_of* p\\u0027 at t. (Here *part_of* is the instance-level part-relation.)\"},{\"type\":[\"literal\"],\"value\":\"a core relation that holds between a part and its whole\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"a core relation that holds between a part and its whole\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"EFO_0000822\"}],\"definitionProperty\":[{\"type\":[\"literal\"],\"value\":\"http://purl.obolibrary.org/obo/IAO_0000115\"},{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#comment\"}],\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://purl.obolibrary.org/obo/IAO_0000111\":[{\"type\":[\"literal\"],\"value\":\"is part of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"is part of\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000112\":[{\"type\":[\"literal\"],\"value\":\"my brain is part of my body (continuant parthood, two material entities)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my brain is part of my body (continuant parthood, two material entities)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"this day is part of this year (occurrent parthood)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"this day is part of this year (occurrent parthood)\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000115\":[{\"type\":[\"literal\"],\"value\":\"For continuants: C part_of C\\u0027 if and only if: given any c that instantiates C at a time t, there is some c\\u0027 such that c\\u0027 instantiates C\\u0027 at time t, and c *part_of* c\\u0027 at t. For processes: P part_of P\\u0027 if and only if: given any p that instantiates P at a time t, there is some p\\u0027 such that p\\u0027 instantiates P\\u0027 at time t, and p *part_of* p\\u0027 at t. (Here *part_of* is the instance-level part-relation.)\"},{\"type\":[\"literal\"],\"value\":\"a core relation that holds between a part and its whole\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"a core relation that holds between a part and its whole\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000116\":[{\"type\":[\"literal\"],\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000118\":[{\"type\":[\"literal\"],\"value\":\"part_of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part_of\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/RO_0001900\":\"http://purl.obolibrary.org/obo/RO_0001901\",\"http://purl.obolibrary.org/obo/RO_0040042\":[\"http://purl.obolibrary.org/obo/BFO_0000002\",\"http://purl.obolibrary.org/obo/BFO_0000003\",\"http://purl.obolibrary.org/obo/BFO_0000004\",\"http://purl.obolibrary.org/obo/BFO_0000017\",\"http://purl.obolibrary.org/obo/BFO_0000019\",\"http://purl.obolibrary.org/obo/BFO_0000020\",\"http://purl.obolibrary.org/obo/BFO_0000031\"],\"http://www.ebi.ac.uk/efo/EFO_URI\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/part_of\"},\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":[{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},{\"type\":[\"literal\"],\"value\":\"OBO_REL:part_of\"}],\"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym\":{\"type\":[\"literal\"],\"value\":\"part 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of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"part of\"},{\"type\":[\"literal\"],\"value\":\"part_of\"}],\"http://www.w3.org/2000/01/rdf-schema#seeAlso\":[\"http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections\",\"http://ontologydesignpatterns.org/wiki/Submissions:PartOf\",{\"type\":[\"literal\"],\"value\":\"http://www.obofoundry.org/ro/#OBO_REL:part_of\"}],\"http://www.w3.org/2002/07/owl#inverseOf\":\"http://purl.obolibrary.org/obo/BFO_0000051\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"part of\"},{\"type\":[\"literal\"],\"value\":\"part_of\"}],\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/efo.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"searchableAnnotationValues\":[{\"type\":[\"literal\"],\"value\":\"is part of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"is part of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"my brain is part of my body (continuant parthood, two material entities)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my brain is part of my body (continuant parthood, two material entities)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"this day is part of this year (occurrent parthood)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"this day is part of this year (occurrent parthood)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"For continuants: C part_of C\\u0027 if and only if: given any c that instantiates C at a time t, there is some c\\u0027 such that c\\u0027 instantiates C\\u0027 at time t, and c *part_of* c\\u0027 at t. For processes: P part_of P\\u0027 if and only if: given any p that instantiates P at a time t, there is some p\\u0027 such that p\\u0027 instantiates P\\u0027 at time t, and p *part_of* p\\u0027 at t. (Here *part_of* is the instance-level part-relation.)\"},{\"type\":[\"literal\"],\"value\":\"a core relation that holds between a part and its whole\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"a core relation that holds between a part and its whole\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"part_of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part_of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/part_of\"},{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},{\"type\":[\"literal\"],\"value\":\"OBO_REL:part_of\"},{\"type\":[\"literal\"],\"value\":\"part of\"},{\"type\":[\"literal\"],\"value\":\"external\"},{\"type\":[\"literal\"],\"value\":\"human_stages_ontology\"},{\"type\":[\"literal\"],\"value\":\"protein\"},{\"type\":[\"literal\"],\"value\":\"quality\"},{\"type\":[\"literal\"],\"value\":\"relationship\"},{\"type\":[\"literal\"],\"value\":\"uberon\"},false],\"shortForm\":{\"type\":[\"literal\"],\"value\":\"BFO_0000050\"},\"synonym\":{\"type\":[\"literal\"],\"value\":\"part of\"},\"synonymProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym\"},\"isDefiningOntology\":false,\"appearsIn\":[\"efo-hierarchical-properties\"],\"linkedEntities\":{\"http://purl.obolibrary.org/obo/BFO_0000019\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000019\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000019\"},\"http://purl.obolibrary.org/obo/BFO_0000017\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000017\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000017\"},\"http://purl.obolibrary.org/obo/RO_0040042\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"RO_0040042\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"RO:0040042\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#id\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"id\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"id\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#inSubset\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"inSubset\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"inSubset\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000116\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000116\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000116\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000115\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000115\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000115\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000112\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000112\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000112\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000051\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":[{\"type\":[\"literal\"],\"value\":\"has part\"},{\"type\":[\"literal\"],\"value\":\"has_part\"}],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000111\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000111\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000111\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"BFO:0000050\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"BFO:0000050\"},\"http://purl.obolibrary.org/obo/BFO_0000004\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000004\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000004\"},\"http://purl.obolibrary.org/obo/IAO_0000118\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000118\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000118\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.ebi.ac.uk/efo/EFO_URI\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"EFO_URI\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"EFO:URI\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/RO_0001900\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"RO_0001900\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"RO:0001900\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/RO_0001901\":{\"url\":\"http://purl.obolibrary.org/obo/RO_0001901\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"ro:0001901\"},\"http://purl.obolibrary.org/obo/BFO_0000002\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000002\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000002\"},\"http://purl.obolibrary.org/obo/BFO_0000003\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000003\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000003\"},\"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasExactSynonym\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasExactSynonym\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#shorthand\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasOBONamespace\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasOBONamespace\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000031\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000031\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000031\"},\"http://purl.obolibrary.org/obo/BFO_0000020\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000020\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000020\"}}}","appearsIn":["efo-hierarchical-properties"],"curie":"BFO:0000050","definition":["For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)","a core relation that holds between a part and its whole","a core relation that holds between a part and its whole","EFO_0000822"],"definitionProperty":["http://purl.obolibrary.org/obo/IAO_0000115","http://www.w3.org/2000/01/rdf-schema#comment"],"directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//purl.obolibrary.org/obo/IAO_0000111":["is part of","is part of"],"http__//purl.obolibrary.org/obo/IAO_0000112":["my brain is part of my body (continuant parthood, two material entities)","my brain is part of my body (continuant parthood, two material entities)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","this day is part of this year (occurrent parthood)","this day is part of this year (occurrent parthood)"],"http__//purl.obolibrary.org/obo/IAO_0000115":["For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)","a core relation that holds between a part and its whole","a core relation that holds between a part and its whole"],"http__//purl.obolibrary.org/obo/IAO_0000116":["Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027."],"http__//purl.obolibrary.org/obo/IAO_0000118":["part_of","part_of"],"http__//purl.obolibrary.org/obo/RO_0001900":"http://purl.obolibrary.org/obo/RO_0001901","http__//purl.obolibrary.org/obo/RO_0040042":["http://purl.obolibrary.org/obo/BFO_0000002","http://purl.obolibrary.org/obo/BFO_0000003","http://purl.obolibrary.org/obo/BFO_0000004","http://purl.obolibrary.org/obo/BFO_0000017","http://purl.obolibrary.org/obo/BFO_0000019","http://purl.obolibrary.org/obo/BFO_0000020","http://purl.obolibrary.org/obo/BFO_0000031"],"http__//www.ebi.ac.uk/efo/EFO_URI":"http://www.ebi.ac.uk/efo/part_of","http__//www.geneontology.org/formats/oboInOwl#hasDbXref":["BFO:0000050","OBO_REL:part_of"],"http__//www.geneontology.org/formats/oboInOwl#hasExactSynonym":"part of","http__//www.geneontology.org/formats/oboInOwl#hasOBONamespace":["external","human_stages_ontology","protein","quality","relationship","uberon"],"http__//www.geneontology.org/formats/oboInOwl#id":"part_of","http__//www.geneontology.org/formats/oboInOwl#inSubset":["http://purl.obolibrary.org/obo/valid_for_go_annotation_extension","http://purl.obolibrary.org/obo/valid_for_go_gp2term","http://purl.obolibrary.org/obo/valid_for_go_ontology","http://purl.obolibrary.org/obo/valid_for_gocam"],"http__//www.geneontology.org/formats/oboInOwl#shorthand":"part_of","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":["http://www.w3.org/2002/07/owl#ObjectProperty","http://www.w3.org/2002/07/owl#TransitiveProperty"],"http__//www.w3.org/2000/01/rdf-schema#comment":"EFO_0000822","http__//www.w3.org/2000/01/rdf-schema#label":["part of","part of","part_of"],"http__//www.w3.org/2000/01/rdf-schema#seeAlso":["http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections","http://ontologydesignpatterns.org/wiki/Submissions:PartOf","http://www.obofoundry.org/ro/#OBO_REL:part_of"],"http__//www.w3.org/2002/07/owl#inverseOf":"http://purl.obolibrary.org/obo/BFO_0000051","id":"efo-hierarchical-properties+property+http://purl.obolibrary.org/obo/BFO_0000050","imported":"false","iri":"http://purl.obolibrary.org/obo/BFO_0000050","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":["part of","part of","part_of"],"numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"efo-hierarchical-properties","ontologyIri":"http://www.ebi.ac.uk/efo/efo.owl","ontologyPreferredPrefix":"efo-hierarchical-properties","searchableAnnotationValues":["is part of","is part of","my brain is part of my body (continuant parthood, two material entities)","my brain is part of my body (continuant parthood, two material entities)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","this day is part of this year (occurrent parthood)","this day is part of this year (occurrent parthood)","For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)","a core relation that holds between a part and its whole","a core relation that holds between a part and its whole","Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.","part_of","part_of","http://www.ebi.ac.uk/efo/part_of","BFO:0000050","OBO_REL:part_of","part of","external","human_stages_ontology","protein","quality","relationship","uberon","false"],"shortForm":"BFO_0000050","synonym":"part of","synonymProperty":"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","type":["property","objectProperty","entity"]} -{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/BFO_0000051\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://www.ebi.ac.uk/efo/EFO_URI\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/has_part\"},\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},\"http://www.geneontology.org/formats/oboInOwl#shorthand\":{\"type\":[\"literal\"],\"value\":\"has_part\"},\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":[\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"http://www.w3.org/2002/07/owl#TransitiveProperty\"],\"http://www.w3.org/2000/01/rdf-schema#label\":[{\"type\":[\"literal\"],\"value\":\"has part\"},{\"type\":[\"literal\"],\"value\":\"has_part\"}],\"http://www.w3.org/2002/07/owl#inverseOf\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":[{\"type\":[\"literal\"],\"value\":\"has part\"},{\"type\":[\"literal\"],\"value\":\"has_part\"}],\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/efo.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"searchableAnnotationValues\":[{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/has_part\"},{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},{\"type\":[\"literal\"],\"value\":\"has_part\"},false],\"shortForm\":{\"type\":[\"literal\"],\"value\":\"BFO_0000051\"},\"isDefiningOntology\":false,\"appearsIn\":[\"efo-hierarchical-properties\"],\"linkedEntities\":{\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#shorthand\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000050\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"part of\"},{\"type\":[\"literal\"],\"value\":\"part_of\"}],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"BFO:0000051\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000051\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"BFO:0000051\"},\"http://www.ebi.ac.uk/efo/EFO_URI\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"EFO_URI\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"EFO:URI\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]}}}","appearsIn":["efo-hierarchical-properties"],"curie":"BFO:0000051","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//www.ebi.ac.uk/efo/EFO_URI":"http://www.ebi.ac.uk/efo/has_part","http__//www.geneontology.org/formats/oboInOwl#hasDbXref":"BFO:0000051","http__//www.geneontology.org/formats/oboInOwl#shorthand":"has_part","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":["http://www.w3.org/2002/07/owl#ObjectProperty","http://www.w3.org/2002/07/owl#TransitiveProperty"],"http__//www.w3.org/2000/01/rdf-schema#label":["has part","has_part"],"http__//www.w3.org/2002/07/owl#inverseOf":"http://purl.obolibrary.org/obo/BFO_0000050","id":"efo-hierarchical-properties+property+http://purl.obolibrary.org/obo/BFO_0000051","imported":"false","iri":"http://purl.obolibrary.org/obo/BFO_0000051","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":["has part","has_part"],"numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"efo-hierarchical-properties","ontologyIri":"http://www.ebi.ac.uk/efo/efo.owl","ontologyPreferredPrefix":"efo-hierarchical-properties","searchableAnnotationValues":["http://www.ebi.ac.uk/efo/has_part","BFO:0000051","has_part","false"],"shortForm":"BFO_0000051","type":["property","objectProperty","entity"]} +{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"definition\":[{\"type\":[\"literal\"],\"value\":\"For continuants: C part_of C\\u0027 if and only if: given any c that instantiates C at a time t, there is some c\\u0027 such that c\\u0027 instantiates C\\u0027 at time t, and c *part_of* c\\u0027 at t. For processes: P part_of P\\u0027 if and only if: given any p that instantiates P at a time t, there is some p\\u0027 such that p\\u0027 instantiates P\\u0027 at time t, and p *part_of* p\\u0027 at t. (Here *part_of* is the instance-level part-relation.)\"},{\"type\":[\"literal\"],\"value\":\"a core relation that holds between a part and its whole\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"a core relation that holds between a part and its whole\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"EFO_0000822\"}],\"definitionProperty\":[{\"type\":[\"literal\"],\"value\":\"http://purl.obolibrary.org/obo/IAO_0000115\"},{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#comment\"}],\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://purl.obolibrary.org/obo/IAO_0000111\":[{\"type\":[\"literal\"],\"value\":\"is part of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"is part of\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000112\":[{\"type\":[\"literal\"],\"value\":\"my brain is part of my body (continuant parthood, two material entities)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my brain is part of my body (continuant parthood, two material entities)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"this day is part of this year (occurrent parthood)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"this day is part of this year (occurrent parthood)\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000115\":[{\"type\":[\"literal\"],\"value\":\"For continuants: C part_of C\\u0027 if and only if: given any c that instantiates C at a time t, there is some c\\u0027 such that c\\u0027 instantiates C\\u0027 at time t, and c *part_of* c\\u0027 at t. For processes: P part_of P\\u0027 if and only if: given any p that instantiates P at a time t, there is some p\\u0027 such that p\\u0027 instantiates P\\u0027 at time t, and p *part_of* p\\u0027 at t. (Here *part_of* is the instance-level part-relation.)\"},{\"type\":[\"literal\"],\"value\":\"a core relation that holds between a part and its whole\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"a core relation that holds between a part and its whole\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000116\":[{\"type\":[\"literal\"],\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/IAO_0000118\":[{\"type\":[\"literal\"],\"value\":\"part_of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part_of\",\"lang\":\"en\"}],\"http://purl.obolibrary.org/obo/RO_0001900\":\"http://purl.obolibrary.org/obo/RO_0001901\",\"http://purl.obolibrary.org/obo/RO_0040042\":[\"http://purl.obolibrary.org/obo/BFO_0000002\",\"http://purl.obolibrary.org/obo/BFO_0000003\",\"http://purl.obolibrary.org/obo/BFO_0000004\",\"http://purl.obolibrary.org/obo/BFO_0000017\",\"http://purl.obolibrary.org/obo/BFO_0000019\",\"http://purl.obolibrary.org/obo/BFO_0000020\",\"http://purl.obolibrary.org/obo/BFO_0000031\"],\"http://www.ebi.ac.uk/efo/EFO_URI\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/part_of\"},\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":[{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},{\"type\":[\"literal\"],\"value\":\"OBO_REL:part_of\"}],\"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym\":{\"type\":[\"literal\"],\"value\":\"part of\"},\"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace\":[{\"type\":[\"literal\"],\"value\":\"external\"},{\"type\":[\"literal\"],\"value\":\"human_stages_ontology\"},{\"type\":[\"literal\"],\"value\":\"protein\"},{\"type\":[\"literal\"],\"value\":\"quality\"},{\"type\":[\"literal\"],\"value\":\"relationship\"},{\"type\":[\"literal\"],\"value\":\"uberon\"}],\"http://www.geneontology.org/formats/oboInOwl#id\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"http://www.geneontology.org/formats/oboInOwl#inSubset\":[\"http://purl.obolibrary.org/obo/valid_for_go_annotation_extension\",\"http://purl.obolibrary.org/obo/valid_for_go_gp2term\",\"http://purl.obolibrary.org/obo/valid_for_go_ontology\",\"http://purl.obolibrary.org/obo/valid_for_gocam\"],\"http://www.geneontology.org/formats/oboInOwl#shorthand\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":[\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"http://www.w3.org/2002/07/owl#TransitiveProperty\"],\"http://www.w3.org/2000/01/rdf-schema#comment\":{\"type\":[\"literal\"],\"value\":\"EFO_0000822\"},\"http://www.w3.org/2000/01/rdf-schema#label\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"part of\"},{\"type\":[\"literal\"],\"value\":\"part_of\"}],\"http://www.w3.org/2000/01/rdf-schema#seeAlso\":[\"http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections\",\"http://ontologydesignpatterns.org/wiki/Submissions:PartOf\",{\"type\":[\"literal\"],\"value\":\"http://www.obofoundry.org/ro/#OBO_REL:part_of\"}],\"http://www.w3.org/2002/07/owl#inverseOf\":\"http://purl.obolibrary.org/obo/BFO_0000051\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"part of\"},{\"type\":[\"literal\"],\"value\":\"part_of\"}],\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/efo.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"searchableAnnotationValues\":[{\"type\":[\"literal\"],\"value\":\"is part of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"is part of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"my brain is part of my body (continuant parthood, two material entities)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my brain is part of my body (continuant parthood, two material entities)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"this day is part of this year (occurrent parthood)\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"this day is part of this year (occurrent parthood)\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"For continuants: C part_of C\\u0027 if and only if: given any c that instantiates C at a time t, there is some c\\u0027 such that c\\u0027 instantiates C\\u0027 at time t, and c *part_of* c\\u0027 at t. For processes: P part_of P\\u0027 if and only if: given any p that instantiates P at a time t, there is some p\\u0027 such that p\\u0027 instantiates P\\u0027 at time t, and p *part_of* p\\u0027 at t. (Here *part_of* is the instance-level part-relation.)\"},{\"type\":[\"literal\"],\"value\":\"a core relation that holds between a part and its whole\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"a core relation that holds between a part and its whole\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\\n\\nA continuant cannot be part of an occurrent: use \\u0027participates in\\u0027. An occurrent cannot be part of a continuant: use \\u0027has participant\\u0027. A material entity cannot be part of an immaterial entity: use \\u0027has location\\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \\u0027inheres in\\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \\u0027bearer of\\u0027.\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"part_of\"},{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part_of\",\"lang\":\"en\"},{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/part_of\"},{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},{\"type\":[\"literal\"],\"value\":\"OBO_REL:part_of\"},{\"type\":[\"literal\"],\"value\":\"part of\"},{\"type\":[\"literal\"],\"value\":\"external\"},{\"type\":[\"literal\"],\"value\":\"human_stages_ontology\"},{\"type\":[\"literal\"],\"value\":\"protein\"},{\"type\":[\"literal\"],\"value\":\"quality\"},{\"type\":[\"literal\"],\"value\":\"relationship\"},{\"type\":[\"literal\"],\"value\":\"uberon\"},false],\"shortForm\":{\"type\":[\"literal\"],\"value\":\"BFO_0000050\"},\"synonym\":{\"type\":[\"literal\"],\"value\":\"part of\"},\"synonymProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym\"},\"isDefiningOntology\":false,\"appearsIn\":[\"efo-hierarchical-properties\"],\"linkedEntities\":{\"http://purl.obolibrary.org/obo/BFO_0000019\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000019\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000019\"},\"http://purl.obolibrary.org/obo/BFO_0000017\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000017\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000017\"},\"http://purl.obolibrary.org/obo/RO_0040042\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"RO_0040042\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"RO:0040042\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#id\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"id\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"id\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#inSubset\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"inSubset\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"inSubset\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000116\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000116\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000116\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000115\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000115\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000115\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000112\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000112\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000112\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000051\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":[{\"type\":[\"literal\"],\"value\":\"has part\"},{\"type\":[\"literal\"],\"value\":\"has_part\"}],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/IAO_0000111\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000111\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000111\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"BFO:0000050\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"BFO:0000050\"},\"http://purl.obolibrary.org/obo/BFO_0000004\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000004\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000004\"},\"http://purl.obolibrary.org/obo/IAO_0000118\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"IAO_0000118\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"IAO:0000118\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.ebi.ac.uk/efo/EFO_URI\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"EFO_URI\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"EFO_URI\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/RO_0001900\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"RO_0001900\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"RO:0001900\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/RO_0001901\":{\"url\":\"http://purl.obolibrary.org/obo/RO_0001901\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"ro:0001901\"},\"http://purl.obolibrary.org/obo/BFO_0000002\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000002\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000002\"},\"http://purl.obolibrary.org/obo/BFO_0000003\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000003\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000003\"},\"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasExactSynonym\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasExactSynonym\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#shorthand\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasOBONamespace\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasOBONamespace\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000031\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000031\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000031\"},\"http://purl.obolibrary.org/obo/BFO_0000020\":{\"url\":\"http://purl.obolibrary.org/obo/BFO_0000020\",\"source\":\"https://raw.githubusercontent.com/geneontology/go-site/master/metadata/db-xrefs.yaml\",\"curie\":\"bfo:0000020\"}}}","appearsIn":["efo-hierarchical-properties"],"curie":"BFO:0000050","definition":["For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)","a core relation that holds between a part and its whole","a core relation that holds between a part and its whole","EFO_0000822"],"definitionProperty":["http://purl.obolibrary.org/obo/IAO_0000115","http://www.w3.org/2000/01/rdf-schema#comment"],"directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//purl.obolibrary.org/obo/IAO_0000111":["is part of","is part of"],"http__//purl.obolibrary.org/obo/IAO_0000112":["my brain is part of my body (continuant parthood, two material entities)","my brain is part of my body (continuant parthood, two material entities)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","this day is part of this year (occurrent parthood)","this day is part of this year (occurrent parthood)"],"http__//purl.obolibrary.org/obo/IAO_0000115":["For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)","a core relation that holds between a part and its whole","a core relation that holds between a part and its whole"],"http__//purl.obolibrary.org/obo/IAO_0000116":["Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027."],"http__//purl.obolibrary.org/obo/IAO_0000118":["part_of","part_of"],"http__//purl.obolibrary.org/obo/RO_0001900":"http://purl.obolibrary.org/obo/RO_0001901","http__//purl.obolibrary.org/obo/RO_0040042":["http://purl.obolibrary.org/obo/BFO_0000002","http://purl.obolibrary.org/obo/BFO_0000003","http://purl.obolibrary.org/obo/BFO_0000004","http://purl.obolibrary.org/obo/BFO_0000017","http://purl.obolibrary.org/obo/BFO_0000019","http://purl.obolibrary.org/obo/BFO_0000020","http://purl.obolibrary.org/obo/BFO_0000031"],"http__//www.ebi.ac.uk/efo/EFO_URI":"http://www.ebi.ac.uk/efo/part_of","http__//www.geneontology.org/formats/oboInOwl#hasDbXref":["BFO:0000050","OBO_REL:part_of"],"http__//www.geneontology.org/formats/oboInOwl#hasExactSynonym":"part of","http__//www.geneontology.org/formats/oboInOwl#hasOBONamespace":["external","human_stages_ontology","protein","quality","relationship","uberon"],"http__//www.geneontology.org/formats/oboInOwl#id":"part_of","http__//www.geneontology.org/formats/oboInOwl#inSubset":["http://purl.obolibrary.org/obo/valid_for_go_annotation_extension","http://purl.obolibrary.org/obo/valid_for_go_gp2term","http://purl.obolibrary.org/obo/valid_for_go_ontology","http://purl.obolibrary.org/obo/valid_for_gocam"],"http__//www.geneontology.org/formats/oboInOwl#shorthand":"part_of","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":["http://www.w3.org/2002/07/owl#ObjectProperty","http://www.w3.org/2002/07/owl#TransitiveProperty"],"http__//www.w3.org/2000/01/rdf-schema#comment":"EFO_0000822","http__//www.w3.org/2000/01/rdf-schema#label":["part of","part of","part_of"],"http__//www.w3.org/2000/01/rdf-schema#seeAlso":["http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections","http://ontologydesignpatterns.org/wiki/Submissions:PartOf","http://www.obofoundry.org/ro/#OBO_REL:part_of"],"http__//www.w3.org/2002/07/owl#inverseOf":"http://purl.obolibrary.org/obo/BFO_0000051","id":"efo-hierarchical-properties+property+http://purl.obolibrary.org/obo/BFO_0000050","imported":"false","iri":"http://purl.obolibrary.org/obo/BFO_0000050","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":["part of","part of","part_of"],"numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"efo-hierarchical-properties","ontologyIri":"http://www.ebi.ac.uk/efo/efo.owl","ontologyPreferredPrefix":"efo-hierarchical-properties","searchableAnnotationValues":["is part of","is part of","my brain is part of my body (continuant parthood, two material entities)","my brain is part of my body (continuant parthood, two material entities)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)","this day is part of this year (occurrent parthood)","this day is part of this year (occurrent parthood)","For continuants: C part_of C\u0027 if and only if: given any c that instantiates C at a time t, there is some c\u0027 such that c\u0027 instantiates C\u0027 at time t, and c *part_of* c\u0027 at t. For processes: P part_of P\u0027 if and only if: given any p that instantiates P at a time t, there is some p\u0027 such that p\u0027 instantiates P\u0027 at time t, and p *part_of* p\u0027 at t. (Here *part_of* is the instance-level part-relation.)","a core relation that holds between a part and its whole","a core relation that holds between a part and its whole","Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/","Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.","Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use \u0027participates in\u0027. An occurrent cannot be part of a continuant: use \u0027has participant\u0027. A material entity cannot be part of an immaterial entity: use \u0027has location\u0027. A specifically dependent continuant cannot be part of an independent continuant: use \u0027inheres in\u0027. An independent continuant cannot be part of a specifically dependent continuant: use \u0027bearer of\u0027.","part_of","part_of","http://www.ebi.ac.uk/efo/part_of","BFO:0000050","OBO_REL:part_of","part of","external","human_stages_ontology","protein","quality","relationship","uberon","false"],"shortForm":"BFO_0000050","synonym":"part of","synonymProperty":"http://www.geneontology.org/formats/oboInOwl#hasExactSynonym","type":["property","objectProperty","entity"]} +{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/BFO_0000051\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://www.ebi.ac.uk/efo/EFO_URI\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/has_part\"},\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},\"http://www.geneontology.org/formats/oboInOwl#shorthand\":{\"type\":[\"literal\"],\"value\":\"has_part\"},\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":[\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"http://www.w3.org/2002/07/owl#TransitiveProperty\"],\"http://www.w3.org/2000/01/rdf-schema#label\":[{\"type\":[\"literal\"],\"value\":\"has part\"},{\"type\":[\"literal\"],\"value\":\"has_part\"}],\"http://www.w3.org/2002/07/owl#inverseOf\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":[{\"type\":[\"literal\"],\"value\":\"has part\"},{\"type\":[\"literal\"],\"value\":\"has_part\"}],\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/efo.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"efo-hierarchical-properties\"},\"searchableAnnotationValues\":[{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/efo/has_part\"},{\"type\":[\"literal\"],\"value\":\"BFO:0000051\"},{\"type\":[\"literal\"],\"value\":\"has_part\"},false],\"shortForm\":{\"type\":[\"literal\"],\"value\":\"BFO_0000051\"},\"isDefiningOntology\":false,\"appearsIn\":[\"efo-hierarchical-properties\"],\"linkedEntities\":{\"http://www.geneontology.org/formats/oboInOwl#hasDbXref\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"hasDbXref\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://www.geneontology.org/formats/oboInOwl#shorthand\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"shorthand\"},\"type\":[\"property\",\"annotationProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000050\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":[{\"type\":[\"literal\"],\"datatype\":\"http://www.w3.org/1999/02/22-rdf-syntax-ns#langString\",\"value\":\"part 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diff --git a/testcases_expected_output/hierarchical-properties/partof/classes.jsonl b/testcases_expected_output/hierarchical-properties/partof/classes.jsonl index 4009ed857..9cd85146b 100644 --- a/testcases_expected_output/hierarchical-properties/partof/classes.jsonl +++ b/testcases_expected_output/hierarchical-properties/partof/classes.jsonl @@ -1,4 +1,4 @@ -{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/MS_1000353\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"MS:1000353\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":true,\"hasHierarchicalParents\":false,\"hierarchicalAncestor\":[],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"http://www.w3.org/2000/01/rdf-schema#label\":{\"type\":[\"literal\"],\"value\":\"adduct ion\"},\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"adduct 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ion\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"MS:1000353\"},\"type\":[\"class\",\"entity\"]}}}","appearsIn":["partof"],"curie":"MS:1003056","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"true","hierarchicalAncestor":"http://purl.obolibrary.org/obo/MS_1000353","hierarchicalParent":"http://purl.obolibrary.org/obo/MS_1000353","hierarchicalProperty":"http://www.w3.org/2000/01/rdf-schema#subClassOf","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","http__//www.w3.org/2000/01/rdf-schema#label":"adduct ion property","id":"partof+class+http://purl.obolibrary.org/obo/MS_1003056","imported":"false","iri":"http://purl.obolibrary.org/obo/MS_1003056","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"adduct ion property","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"partof","ontologyIri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","ontologyPreferredPrefix":"partof","relatedTo":"http://purl.obolibrary.org/obo/MS_1000353","searchableAnnotationValues":"false","shortForm":"MS_1003056","type":["class","entity"]} {"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/UBERON_0000916\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"UBERON:0000916\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":true,\"hasHierarchicalParents\":false,\"hierarchicalAncestor\":[],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"http://www.w3.org/2000/01/rdf-schema#label\":{\"type\":[\"literal\"],\"value\":\"abdomen\"},\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"abdomen\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":1.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"relatedFrom\":{\"property\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"value\":\"http://purl.obolibrary.org/obo/UBERON_0003684\",\"type\":[\"related\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://purl.obolibrary.org/obo/UBERON_0000916\",\"isObsolete\":false},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"UBERON_0000916\"},\"isDefiningOntology\":false,\"appearsIn\":[\"partof\"],\"linkedEntities\":{\"http://purl.obolibrary.org/obo/BFO_0000050\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/UBERON_0003684\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"abdominal cavity\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"UBERON:0003684\"},\"type\":[\"class\",\"entity\"]}}}","appearsIn":["partof"],"curie":"UBERON:0000916","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"true","hasHierarchicalParents":"false","hierarchicalAncestor":[],"http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","http__//www.w3.org/2000/01/rdf-schema#label":"abdomen","id":"partof+class+http://purl.obolibrary.org/obo/UBERON_0000916","imported":"false","iri":"http://purl.obolibrary.org/obo/UBERON_0000916","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"abdomen","numDescendants":"0.0","numHierarchicalDescendants":"1.0","ontologyId":"partof","ontologyIri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","ontologyPreferredPrefix":"partof","relatedFrom":"http://purl.obolibrary.org/obo/UBERON_0003684","searchableAnnotationValues":"false","shortForm":"UBERON_0000916","type":["class","entity"]} {"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/UBERON_0003684\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"UBERON:0003684\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":true,\"hierarchicalAncestor\":\"http://purl.obolibrary.org/obo/UBERON_0000916\",\"hierarchicalParent\":{\"type\":[\"reification\"],\"value\":\"http://purl.obolibrary.org/obo/UBERON_0000916\",\"axioms\":[{\"childRelationToParent\":\"http://purl.obolibrary.org/obo/BFO_0000050\"}]},\"hierarchicalProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#subClassOf\"},\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"http://www.w3.org/2000/01/rdf-schema#label\":{\"type\":[\"literal\"],\"value\":\"abdominal cavity\"},\"http://www.w3.org/2000/01/rdf-schema#subClassOf\":{\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://purl.obolibrary.org/obo/UBERON_0000916\",\"isObsolete\":false},\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"abdominal cavity\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"relatedTo\":{\"property\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"value\":\"http://purl.obolibrary.org/obo/UBERON_0000916\",\"type\":[\"related\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://purl.obolibrary.org/obo/UBERON_0000916\",\"isObsolete\":false},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"UBERON_0003684\"},\"isDefiningOntology\":false,\"appearsIn\":[\"partof\"],\"linkedEntities\":{\"http://purl.obolibrary.org/obo/UBERON_0000916\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"abdomen\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"UBERON:0000916\"},\"type\":[\"class\",\"entity\"]},\"http://purl.obolibrary.org/obo/BFO_0000050\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]}}}","appearsIn":["partof"],"curie":"UBERON:0003684","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"true","hierarchicalAncestor":"http://purl.obolibrary.org/obo/UBERON_0000916","hierarchicalParent":"http://purl.obolibrary.org/obo/UBERON_0000916","hierarchicalProperty":"http://www.w3.org/2000/01/rdf-schema#subClassOf","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","http__//www.w3.org/2000/01/rdf-schema#label":"abdominal cavity","id":"partof+class+http://purl.obolibrary.org/obo/UBERON_0003684","imported":"false","iri":"http://purl.obolibrary.org/obo/UBERON_0003684","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"abdominal cavity","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"partof","ontologyIri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","ontologyPreferredPrefix":"partof","relatedTo":"http://purl.obolibrary.org/obo/UBERON_0000916","searchableAnnotationValues":"false","shortForm":"UBERON_0003684","type":["class","entity"]} diff --git a/testcases_expected_output/hierarchical-properties/partof/ontologies.json b/testcases_expected_output/hierarchical-properties/partof/ontologies.json index 49f39ba79..ceaa7cc53 100644 --- a/testcases_expected_output/hierarchical-properties/partof/ontologies.json +++ b/testcases_expected_output/hierarchical-properties/partof/ontologies.json @@ -501,7 +501,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/hierarchical-properties/partof/ontologies.jsonl b/testcases_expected_output/hierarchical-properties/partof/ontologies.jsonl index 2ee420346..09fb86987 100644 --- a/testcases_expected_output/hierarchical-properties/partof/ontologies.jsonl +++ b/testcases_expected_output/hierarchical-properties/partof/ontologies.jsonl @@ -1 +1 @@ -{"_json":"{\"directAncestor\":[],\"exportsTo\":[],\"hierarchical_property\":[\"http://purl.obolibrary.org/obo/BFO_0000050\",\"http://purl.obolibrary.org/obo/ms#part_of\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Ontology\",\"http://www.w3.org/2002/07/owl#versionIRI\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl\",\"imported\":false,\"importsFrom\":[],\"iri\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl\",\"isObsolete\":false,\"language\":{\"type\":[\"literal\"],\"value\":\"en\"},\"linkedEntities\":{\"http://purl.obolibrary.org/obo/BFO_0000050\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/ms#part_of\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"part:of\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]}},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"numberOfClasses\":{\"type\":[\"literal\"],\"value\":\"4\"},\"numberOfEntities\":{\"type\":[\"literal\"],\"value\":\"6\"},\"numberOfIndividuals\":{\"type\":[\"literal\"],\"value\":\"0\"},\"numberOfProperties\":{\"type\":[\"literal\"],\"value\":\"2\"},\"oboSlims\":false,\"ontologyId\":\"partof\",\"ontology_purl\":\"./testcases/hierarchical-properties/partof.rdf\",\"preferredPrefix\":\"partof\",\"searchableAnnotationValues\":[false,{\"type\":[\"literal\"],\"value\":\"en\"},{\"type\":[\"literal\"],\"value\":\"4\"},{\"type\":[\"literal\"],\"value\":\"6\"},{\"type\":[\"literal\"],\"value\":\"0\"},{\"type\":[\"literal\"],\"value\":\"2\"}],\"title\":\"partof\",\"type\":[\"ontology\"]}","directAncestor":[],"exportsTo":[],"hierarchical_property":["http://purl.obolibrary.org/obo/BFO_0000050","http://purl.obolibrary.org/obo/ms#part_of"],"http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Ontology","http__//www.w3.org/2002/07/owl#versionIRI":"http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl","id":"partof+ontology+http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","imported":"false","importsFrom":[],"iri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","isObsolete":"false","language":"en","numDescendants":"0.0","numHierarchicalDescendants":"0.0","numberOfClasses":"4","numberOfEntities":"6","numberOfIndividuals":"0","numberOfProperties":"2","oboSlims":"false","ontologyId":"partof","ontology_purl":"./testcases/hierarchical-properties/partof.rdf","preferredPrefix":"partof","searchableAnnotationValues":["false","en","4","6","0","2"],"title":"partof","type":["ontology"]} +{"_json":"{\"directAncestor\":[],\"exportsTo\":[],\"hierarchical_property\":[\"http://purl.obolibrary.org/obo/BFO_0000050\",\"http://purl.obolibrary.org/obo/ms#part_of\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Ontology\",\"http://www.w3.org/2002/07/owl#versionIRI\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl\",\"imported\":false,\"importsFrom\":[],\"iri\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl\",\"isObsolete\":false,\"language\":{\"type\":[\"literal\"],\"value\":\"en\"},\"linkedEntities\":{\"http://purl.obolibrary.org/obo/BFO_0000050\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://purl.obolibrary.org/obo/ms#part_of\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]}},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"numberOfClasses\":{\"type\":[\"literal\"],\"value\":\"4\"},\"numberOfEntities\":{\"type\":[\"literal\"],\"value\":\"6\"},\"numberOfIndividuals\":{\"type\":[\"literal\"],\"value\":\"0\"},\"numberOfProperties\":{\"type\":[\"literal\"],\"value\":\"2\"},\"oboSlims\":false,\"ontologyId\":\"partof\",\"ontology_purl\":\"./testcases/hierarchical-properties/partof.rdf\",\"preferredPrefix\":\"partof\",\"searchableAnnotationValues\":[false,{\"type\":[\"literal\"],\"value\":\"en\"},{\"type\":[\"literal\"],\"value\":\"4\"},{\"type\":[\"literal\"],\"value\":\"6\"},{\"type\":[\"literal\"],\"value\":\"0\"},{\"type\":[\"literal\"],\"value\":\"2\"}],\"title\":\"partof\",\"type\":[\"ontology\"]}","directAncestor":[],"exportsTo":[],"hierarchical_property":["http://purl.obolibrary.org/obo/BFO_0000050","http://purl.obolibrary.org/obo/ms#part_of"],"http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Ontology","http__//www.w3.org/2002/07/owl#versionIRI":"http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl","id":"partof+ontology+http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","imported":"false","importsFrom":[],"iri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","isObsolete":"false","language":"en","numDescendants":"0.0","numHierarchicalDescendants":"0.0","numberOfClasses":"4","numberOfEntities":"6","numberOfIndividuals":"0","numberOfProperties":"2","oboSlims":"false","ontologyId":"partof","ontology_purl":"./testcases/hierarchical-properties/partof.rdf","preferredPrefix":"partof","searchableAnnotationValues":["false","en","4","6","0","2"],"title":"partof","type":["ontology"]} diff --git a/testcases_expected_output/hierarchical-properties/partof/ontologies_linked.json b/testcases_expected_output/hierarchical-properties/partof/ontologies_linked.json index 2dc8f9444..4399c3262 100644 --- a/testcases_expected_output/hierarchical-properties/partof/ontologies_linked.json +++ b/testcases_expected_output/hierarchical-properties/partof/ontologies_linked.json @@ -177,7 +177,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "type": [ "property", @@ -320,7 +320,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "type": [ "property", @@ -696,7 +696,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "directAncestor": [], "hasDirectChildren": false, @@ -786,7 +786,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "type": [ "property", diff --git a/testcases_expected_output/hierarchical-properties/partof/partof_classes.csv b/testcases_expected_output/hierarchical-properties/partof/partof_classes.csv index 00fc2f589..f2ee184a8 100644 --- a/testcases_expected_output/hierarchical-properties/partof/partof_classes.csv +++ b/testcases_expected_output/hierarchical-properties/partof/partof_classes.csv @@ -1,5 +1,5 @@ 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-"partof+ontology+http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","Ontology","{""ontologyId"":""partof"",""importsFrom"":[],""exportsTo"":[],""iri"":""http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl"",""preferredPrefix"":""partof"",""title"":""partof"",""hierarchical_property"":[""http://purl.obolibrary.org/obo/BFO_0000050"",""http://purl.obolibrary.org/obo/ms#part_of""],""oboSlims"":false,""ontology_purl"":""./testcases/hierarchical-properties/partof.rdf"",""type"":[""ontology""],""directAncestor"":[],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Ontology"",""http://www.w3.org/2002/07/owl#versionIRI"":""http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl"",""imported"":false,""isObsolete"":false,""language"":{""type"":[""literal""],""value"":""en""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""numberOfClasses"":{""type"":[""literal""],""value"":""4""},""numberOfEntities"":{""type"":[""literal""],""value"":""6""},""numberOfIndividuals"":{""type"":[""literal""],""value"":""0""},""numberOfProperties"":{""type"":[""literal""],""value"":""2""},""searchableAnnotationValues"":[false,{""type"":[""literal""],""value"":""en""},{""type"":[""literal""],""value"":""4""},{""type"":[""literal""],""value"":""6""},{""type"":[""literal""],""value"":""0""},{""type"":[""literal""],""value"":""2""}],""linkedEntities"":{""http://purl.obolibrary.org/obo/BFO_0000050"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""BFO:0000050""},""type"":[""property"",""objectProperty"",""entity""]},""http://purl.obolibrary.org/obo/ms#part_of"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""part:of""},""type"":[""property"",""objectProperty"",""entity""]}}}","http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","0","","./testcases/hierarchical-properties/partof.rdf","0.0","2","4","false","en","0.0","http://purl.obolibrary.org/obo/BFO_0000050|http://purl.obolibrary.org/obo/ms#part_of","false","","partof","ontology","partof","","","false","6","partof","http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl","http://www.w3.org/2002/07/owl#Ontology" +"partof+ontology+http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","Ontology","{""ontologyId"":""partof"",""importsFrom"":[],""exportsTo"":[],""iri"":""http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl"",""preferredPrefix"":""partof"",""title"":""partof"",""hierarchical_property"":[""http://purl.obolibrary.org/obo/BFO_0000050"",""http://purl.obolibrary.org/obo/ms#part_of""],""oboSlims"":false,""ontology_purl"":""./testcases/hierarchical-properties/partof.rdf"",""type"":[""ontology""],""directAncestor"":[],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Ontology"",""http://www.w3.org/2002/07/owl#versionIRI"":""http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl"",""imported"":false,""isObsolete"":false,""language"":{""type"":[""literal""],""value"":""en""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""numberOfClasses"":{""type"":[""literal""],""value"":""4""},""numberOfEntities"":{""type"":[""literal""],""value"":""6""},""numberOfIndividuals"":{""type"":[""literal""],""value"":""0""},""numberOfProperties"":{""type"":[""literal""],""value"":""2""},""searchableAnnotationValues"":[false,{""type"":[""literal""],""value"":""en""},{""type"":[""literal""],""value"":""4""},{""type"":[""literal""],""value"":""6""},{""type"":[""literal""],""value"":""0""},{""type"":[""literal""],""value"":""2""}],""linkedEntities"":{""http://purl.obolibrary.org/obo/BFO_0000050"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""BFO:0000050""},""type"":[""property"",""objectProperty"",""entity""]},""http://purl.obolibrary.org/obo/ms#part_of"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""part_of""},""type"":[""property"",""objectProperty"",""entity""]}}}","http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","0","","./testcases/hierarchical-properties/partof.rdf","0.0","2","4","false","en","0.0","http://purl.obolibrary.org/obo/BFO_0000050|http://purl.obolibrary.org/obo/ms#part_of","false","","partof","ontology","partof","","","false","6","partof","http://www.ebi.ac.uk/testcases/hierarchical-properties/v0.0.1/partof.owl","http://www.w3.org/2002/07/owl#Ontology" diff --git a/testcases_expected_output/hierarchical-properties/partof/partof_properties.csv b/testcases_expected_output/hierarchical-properties/partof/partof_properties.csv index 48bd2b7f2..da1c6c6db 100644 --- a/testcases_expected_output/hierarchical-properties/partof/partof_properties.csv +++ b/testcases_expected_output/hierarchical-properties/partof/partof_properties.csv @@ -1,3 +1,3 @@ "id:ID",":LABEL","_json","isPreferredRoot:string[]","iri","hasDirectChildren:string[]","hasHierarchicalParents:string[]","hasHierarchicalChildren:string[]","isDefiningOntology:string[]","linkedEntities:string[]","numDescendants:string[]","numHierarchicalDescendants:string[]","isObsolete:string[]","label:string[]","type:string[]","ontologyPreferredPrefix:string[]","directAncestor:string[]","curie:string[]","hasDirectParents:string[]","imported:string[]","shortForm:string[]","http__//www.w3.org/2000/01/rdf-schema#label:string[]","ontologyId:string[]","ontologyIri:string[]","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type:string[]" "partof+property+http://purl.obolibrary.org/obo/BFO_0000050","OntologyEntity|OntologyProperty","{""iri"":""http://purl.obolibrary.org/obo/BFO_0000050"",""type"":[""property"",""objectProperty"",""entity""],""curie"":{""type"":[""literal""],""value"":""BFO:0000050""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":[""http://www.w3.org/2002/07/owl#ObjectProperty"",""http://www.w3.org/2002/07/owl#TransitiveProperty""],""http://www.w3.org/2000/01/rdf-schema#label"":{""type"":[""literal""],""value"":""part_of""},""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""part_of""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""partof""},""ontologyIri"":{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""partof""},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""BFO_0000050""},""isDefiningOntology"":false,""appearsIn"":[""partof""],""linkedEntities"":{}}","false","http://purl.obolibrary.org/obo/BFO_0000050","false","false","false","false","","0.0","0.0","false","part_of","property|objectProperty|entity","partof","","BFO:0000050","false","false","BFO_0000050","part_of","partof","http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","http://www.w3.org/2002/07/owl#ObjectProperty|http://www.w3.org/2002/07/owl#TransitiveProperty" -"partof+property+http://purl.obolibrary.org/obo/ms#part_of","OntologyEntity|OntologyProperty","{""iri"":""http://purl.obolibrary.org/obo/ms#part_of"",""type"":[""property"",""objectProperty"",""entity""],""curie"":{""type"":[""literal""],""value"":""part:of""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":[""http://www.w3.org/2002/07/owl#ObjectProperty"",""http://www.w3.org/2002/07/owl#TransitiveProperty""],""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""part_of""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""partof""},""ontologyIri"":{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""partof""},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""part_of""},""isDefiningOntology"":false,""appearsIn"":[""partof""],""linkedEntities"":{}}","false","http://purl.obolibrary.org/obo/ms#part_of","false","false","false","false","","0.0","0.0","false","part_of","property|objectProperty|entity","partof","","part:of","false","false","part_of","","partof","http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","http://www.w3.org/2002/07/owl#ObjectProperty|http://www.w3.org/2002/07/owl#TransitiveProperty" +"partof+property+http://purl.obolibrary.org/obo/ms#part_of","OntologyEntity|OntologyProperty","{""iri"":""http://purl.obolibrary.org/obo/ms#part_of"",""type"":[""property"",""objectProperty"",""entity""],""curie"":{""type"":[""literal""],""value"":""part_of""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":[""http://www.w3.org/2002/07/owl#ObjectProperty"",""http://www.w3.org/2002/07/owl#TransitiveProperty""],""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""part_of""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""partof""},""ontologyIri"":{""type"":[""literal""],""value"":""http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""partof""},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""part_of""},""isDefiningOntology"":false,""appearsIn"":[""partof""],""linkedEntities"":{}}","false","http://purl.obolibrary.org/obo/ms#part_of","false","false","false","false","","0.0","0.0","false","part_of","property|objectProperty|entity","partof","","part_of","false","false","part_of","","partof","http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","http://www.w3.org/2002/07/owl#ObjectProperty|http://www.w3.org/2002/07/owl#TransitiveProperty" diff --git a/testcases_expected_output/hierarchical-properties/partof/properties.jsonl b/testcases_expected_output/hierarchical-properties/partof/properties.jsonl index 1d2dc0cf4..2c044fdff 100644 --- a/testcases_expected_output/hierarchical-properties/partof/properties.jsonl +++ b/testcases_expected_output/hierarchical-properties/partof/properties.jsonl @@ -1,2 +1,2 @@ {"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/BFO_0000050\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"BFO:0000050\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":[\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"http://www.w3.org/2002/07/owl#TransitiveProperty\"],\"http://www.w3.org/2000/01/rdf-schema#label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"BFO_0000050\"},\"isDefiningOntology\":false,\"appearsIn\":[\"partof\"],\"linkedEntities\":{}}","appearsIn":["partof"],"curie":"BFO:0000050","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":["http://www.w3.org/2002/07/owl#ObjectProperty","http://www.w3.org/2002/07/owl#TransitiveProperty"],"http__//www.w3.org/2000/01/rdf-schema#label":"part_of","id":"partof+property+http://purl.obolibrary.org/obo/BFO_0000050","imported":"false","iri":"http://purl.obolibrary.org/obo/BFO_0000050","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"part_of","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"partof","ontologyIri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","ontologyPreferredPrefix":"partof","searchableAnnotationValues":"false","shortForm":"BFO_0000050","type":["property","objectProperty","entity"]} -{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/ms#part_of\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"part:of\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":[\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"http://www.w3.org/2002/07/owl#TransitiveProperty\"],\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"isDefiningOntology\":false,\"appearsIn\":[\"partof\"],\"linkedEntities\":{}}","appearsIn":["partof"],"curie":"part:of","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":["http://www.w3.org/2002/07/owl#ObjectProperty","http://www.w3.org/2002/07/owl#TransitiveProperty"],"id":"partof+property+http://purl.obolibrary.org/obo/ms#part_of","imported":"false","iri":"http://purl.obolibrary.org/obo/ms#part_of","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"part_of","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"partof","ontologyIri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","ontologyPreferredPrefix":"partof","searchableAnnotationValues":"false","shortForm":"part_of","type":["property","objectProperty","entity"]} +{"_json":"{\"iri\":\"http://purl.obolibrary.org/obo/ms#part_of\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":[\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"http://www.w3.org/2002/07/owl#TransitiveProperty\"],\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"partof\"},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"isDefiningOntology\":false,\"appearsIn\":[\"partof\"],\"linkedEntities\":{}}","appearsIn":["partof"],"curie":"part_of","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":["http://www.w3.org/2002/07/owl#ObjectProperty","http://www.w3.org/2002/07/owl#TransitiveProperty"],"id":"partof+property+http://purl.obolibrary.org/obo/ms#part_of","imported":"false","iri":"http://purl.obolibrary.org/obo/ms#part_of","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"part_of","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"partof","ontologyIri":"http://www.ebi.ac.uk/testcases/hierarchical-properties/partof.owl","ontologyPreferredPrefix":"partof","searchableAnnotationValues":"false","shortForm":"part_of","type":["property","objectProperty","entity"]} diff --git a/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies.json b/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies.json index d3115fb7d..feae4b028 100644 --- a/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies.json +++ b/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies.json @@ -495,7 +495,7 @@ "type": [ "literal" ], - "value": "XMPL:Preferred_name" + "value": "XMPL_Preferred_name" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies_linked.json b/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies_linked.json index a2c9c6e10..f35410117 100644 --- a/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies_linked.json +++ b/testcases_expected_output/iri-labels/use-user-defined-pref-label/ontologies_linked.json @@ -241,7 +241,7 @@ "type": [ "literal" ], - "value": "XMPL:Preferred_name" + "value": "XMPL_Preferred_name" }, "type": [ "property", @@ -431,7 +431,7 @@ "type": [ "literal" ], - "value": "XMPL:Preferred_name" + "value": "XMPL_Preferred_name" }, "type": [ "property", @@ -714,7 +714,7 @@ "type": [ "literal" ], - "value": "XMPL:Preferred_name" + "value": "XMPL_Preferred_name" }, "directAncestor": [], "hasDirectChildren": false, @@ -852,7 +852,7 @@ "type": [ "literal" ], - "value": "XMPL:Preferred_name" + "value": "XMPL_Preferred_name" }, "type": [ "property", diff --git a/testcases_expected_output/reification/reified-bnode/classes.jsonl b/testcases_expected_output/reification/reified-bnode/classes.jsonl index c831c7fa9..f46fd207f 100644 --- a/testcases_expected_output/reification/reified-bnode/classes.jsonl +++ b/testcases_expected_output/reification/reified-bnode/classes.jsonl @@ -1,2 +1,2 @@ -{"_json":"{\"iri\":\"http://example.com/reified-bnode#cell\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"hierarchicalAncestor\":[],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://example.com/reified-bnode\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"relatedFrom\":{\"property\":\"http://example.com/reified-bnode#part_of\",\"value\":\"http://example.com/reified-bnode#cell_part\",\"type\":[\"related\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"isDefiningOntology\":false,\"appearsIn\":[\"reified-bnode\"],\"linkedEntities\":{\"http://example.com/reified-bnode#part_of\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"part:of\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://example.com/reified-bnode#cell_part\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"cell:part\"},\"type\":[\"class\",\"entity\"]}}}","appearsIn":["reified-bnode"],"curie":"cell","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","hierarchicalAncestor":[],"http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","id":"reified-bnode+class+http://example.com/reified-bnode#cell","imported":"false","iri":"http://example.com/reified-bnode#cell","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"cell","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"reified-bnode","ontologyIri":"http://example.com/reified-bnode","ontologyPreferredPrefix":"reified-bnode","relatedFrom":"http://example.com/reified-bnode#cell_part","searchableAnnotationValues":"false","shortForm":"cell","type":["class","entity"]} -{"_json":"{\"iri\":\"http://example.com/reified-bnode#cell_part\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"cell:part\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"hierarchicalAncestor\":[],\"hierarchicalProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#subClassOf\"},\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"http://www.w3.org/2000/01/rdf-schema#subClassOf\":[{\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},{\"type\":[\"reification\"],\"value\":{\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},\"axioms\":[{\"http://www.w3.org/2000/01/rdf-schema#comment\":{\"type\":[\"literal\"],\"value\":\"This is an annotation on a property with a bnode value\"}}]}],\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://example.com/reified-bnode\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"relatedTo\":{\"property\":\"http://example.com/reified-bnode#part_of\",\"value\":\"http://example.com/reified-bnode#cell\",\"type\":[\"related\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"isDefiningOntology\":false,\"appearsIn\":[\"reified-bnode\"],\"linkedEntities\":{\"http://example.com/reified-bnode#part_of\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"part:of\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://example.com/reified-bnode#cell\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"type\":[\"class\",\"entity\"]}}}","appearsIn":["reified-bnode"],"curie":"cell:part","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","hierarchicalAncestor":[],"hierarchicalProperty":"http://www.w3.org/2000/01/rdf-schema#subClassOf","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","http__//www.w3.org/2000/01/rdf-schema#subClassOf":[],"id":"reified-bnode+class+http://example.com/reified-bnode#cell_part","imported":"false","iri":"http://example.com/reified-bnode#cell_part","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"cell_part","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"reified-bnode","ontologyIri":"http://example.com/reified-bnode","ontologyPreferredPrefix":"reified-bnode","relatedTo":"http://example.com/reified-bnode#cell","searchableAnnotationValues":"false","shortForm":"cell_part","type":["class","entity"]} +{"_json":"{\"iri\":\"http://example.com/reified-bnode#cell\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"hierarchicalAncestor\":[],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://example.com/reified-bnode\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"relatedFrom\":{\"property\":\"http://example.com/reified-bnode#part_of\",\"value\":\"http://example.com/reified-bnode#cell_part\",\"type\":[\"related\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"isDefiningOntology\":false,\"appearsIn\":[\"reified-bnode\"],\"linkedEntities\":{\"http://example.com/reified-bnode#part_of\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://example.com/reified-bnode#cell_part\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"type\":[\"class\",\"entity\"]}}}","appearsIn":["reified-bnode"],"curie":"cell","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","hierarchicalAncestor":[],"http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","id":"reified-bnode+class+http://example.com/reified-bnode#cell","imported":"false","iri":"http://example.com/reified-bnode#cell","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"cell","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"reified-bnode","ontologyIri":"http://example.com/reified-bnode","ontologyPreferredPrefix":"reified-bnode","relatedFrom":"http://example.com/reified-bnode#cell_part","searchableAnnotationValues":"false","shortForm":"cell","type":["class","entity"]} +{"_json":"{\"iri\":\"http://example.com/reified-bnode#cell_part\",\"type\":[\"class\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"hierarchicalAncestor\":[],\"hierarchicalProperty\":{\"type\":[\"literal\"],\"value\":\"http://www.w3.org/2000/01/rdf-schema#subClassOf\"},\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Class\",\"http://www.w3.org/2000/01/rdf-schema#subClassOf\":[{\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},{\"type\":[\"reification\"],\"value\":{\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},\"axioms\":[{\"http://www.w3.org/2000/01/rdf-schema#comment\":{\"type\":[\"literal\"],\"value\":\"This is an annotation on a property with a bnode value\"}}]}],\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://example.com/reified-bnode\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"relatedTo\":{\"property\":\"http://example.com/reified-bnode#part_of\",\"value\":\"http://example.com/reified-bnode#cell\",\"type\":[\"related\"],\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#Restriction\",\"http://www.w3.org/2002/07/owl#onProperty\":\"http://example.com/reified-bnode#part_of\",\"http://www.w3.org/2002/07/owl#someValuesFrom\":\"http://example.com/reified-bnode#cell\",\"isObsolete\":false},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"cell_part\"},\"isDefiningOntology\":false,\"appearsIn\":[\"reified-bnode\"],\"linkedEntities\":{\"http://example.com/reified-bnode#part_of\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"type\":[\"property\",\"objectProperty\",\"entity\"]},\"http://example.com/reified-bnode#cell\":{\"numAppearsIn\":1.0,\"hasLocalDefinition\":true,\"label\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"curie\":{\"type\":[\"literal\"],\"value\":\"cell\"},\"type\":[\"class\",\"entity\"]}}}","appearsIn":["reified-bnode"],"curie":"cell_part","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","hierarchicalAncestor":[],"hierarchicalProperty":"http://www.w3.org/2000/01/rdf-schema#subClassOf","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#Class","http__//www.w3.org/2000/01/rdf-schema#subClassOf":[],"id":"reified-bnode+class+http://example.com/reified-bnode#cell_part","imported":"false","iri":"http://example.com/reified-bnode#cell_part","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"cell_part","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"reified-bnode","ontologyIri":"http://example.com/reified-bnode","ontologyPreferredPrefix":"reified-bnode","relatedTo":"http://example.com/reified-bnode#cell","searchableAnnotationValues":"false","shortForm":"cell_part","type":["class","entity"]} diff --git a/testcases_expected_output/reification/reified-bnode/ontologies.json b/testcases_expected_output/reification/reified-bnode/ontologies.json index fc45a50eb..45f3d80ef 100644 --- a/testcases_expected_output/reification/reified-bnode/ontologies.json +++ b/testcases_expected_output/reification/reified-bnode/ontologies.json @@ -155,7 +155,7 @@ "type": [ "literal" ], - "value": "cell:part" + "value": "cell_part" }, "directAncestor": [], "hasDirectChildren": false, @@ -260,7 +260,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/reification/reified-bnode/ontologies_linked.json b/testcases_expected_output/reification/reified-bnode/ontologies_linked.json index 607e24f60..5f45915e8 100644 --- a/testcases_expected_output/reification/reified-bnode/ontologies_linked.json +++ b/testcases_expected_output/reification/reified-bnode/ontologies_linked.json @@ -164,7 +164,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "type": [ "property", @@ -185,7 +185,7 @@ "type": [ "literal" ], - "value": "cell:part" + "value": "cell_part" }, "type": [ "class", @@ -204,7 +204,7 @@ "type": [ "literal" ], - "value": "cell:part" + "value": "cell_part" }, "directAncestor": [], "hasDirectChildren": false, @@ -313,7 +313,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "type": [ "property", @@ -356,7 +356,7 @@ "type": [ "literal" ], - "value": "part:of" + "value": "part_of" }, "directAncestor": [], "hasDirectChildren": false, diff --git a/testcases_expected_output/reification/reified-bnode/properties.jsonl b/testcases_expected_output/reification/reified-bnode/properties.jsonl index 23d4f190e..d5103b2e7 100644 --- a/testcases_expected_output/reification/reified-bnode/properties.jsonl +++ b/testcases_expected_output/reification/reified-bnode/properties.jsonl @@ -1 +1 @@ -{"_json":"{\"iri\":\"http://example.com/reified-bnode#part_of\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"part:of\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://example.com/reified-bnode\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"isDefiningOntology\":false,\"appearsIn\":[\"reified-bnode\"],\"linkedEntities\":{}}","appearsIn":["reified-bnode"],"curie":"part:of","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#ObjectProperty","id":"reified-bnode+property+http://example.com/reified-bnode#part_of","imported":"false","iri":"http://example.com/reified-bnode#part_of","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"part_of","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"reified-bnode","ontologyIri":"http://example.com/reified-bnode","ontologyPreferredPrefix":"reified-bnode","searchableAnnotationValues":"false","shortForm":"part_of","type":["property","objectProperty","entity"]} +{"_json":"{\"iri\":\"http://example.com/reified-bnode#part_of\",\"type\":[\"property\",\"objectProperty\",\"entity\"],\"curie\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"directAncestor\":[],\"hasDirectChildren\":false,\"hasDirectParents\":false,\"hasHierarchicalChildren\":false,\"hasHierarchicalParents\":false,\"http://www.w3.org/1999/02/22-rdf-syntax-ns#type\":\"http://www.w3.org/2002/07/owl#ObjectProperty\",\"imported\":false,\"isObsolete\":false,\"isPreferredRoot\":false,\"label\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"numDescendants\":0.0,\"numHierarchicalDescendants\":0.0,\"ontologyId\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"ontologyIri\":{\"type\":[\"literal\"],\"value\":\"http://example.com/reified-bnode\"},\"ontologyPreferredPrefix\":{\"type\":[\"literal\"],\"value\":\"reified-bnode\"},\"searchableAnnotationValues\":false,\"shortForm\":{\"type\":[\"literal\"],\"value\":\"part_of\"},\"isDefiningOntology\":false,\"appearsIn\":[\"reified-bnode\"],\"linkedEntities\":{}}","appearsIn":["reified-bnode"],"curie":"part_of","directAncestor":[],"hasDirectChildren":"false","hasDirectParents":"false","hasHierarchicalChildren":"false","hasHierarchicalParents":"false","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type":"http://www.w3.org/2002/07/owl#ObjectProperty","id":"reified-bnode+property+http://example.com/reified-bnode#part_of","imported":"false","iri":"http://example.com/reified-bnode#part_of","isDefiningOntology":"false","isObsolete":"false","isPreferredRoot":"false","label":"part_of","numDescendants":"0.0","numHierarchicalDescendants":"0.0","ontologyId":"reified-bnode","ontologyIri":"http://example.com/reified-bnode","ontologyPreferredPrefix":"reified-bnode","searchableAnnotationValues":"false","shortForm":"part_of","type":["property","objectProperty","entity"]} diff --git a/testcases_expected_output/reification/reified-bnode/reified-bnode_classes.csv b/testcases_expected_output/reification/reified-bnode/reified-bnode_classes.csv index 6b24047cf..4e601b8be 100644 --- a/testcases_expected_output/reification/reified-bnode/reified-bnode_classes.csv +++ b/testcases_expected_output/reification/reified-bnode/reified-bnode_classes.csv @@ -1,3 +1,3 @@ "id:ID",":LABEL","_json","isPreferredRoot:string[]","hasDirectChildren:string[]","hasHierarchicalParents:string[]","hasHierarchicalChildren:string[]","isDefiningOntology:string[]","linkedEntities:string[]","hierarchicalProperty:string[]","numHierarchicalDescendants:string[]","type:string[]","relatedTo:string[]","http__//www.w3.org/2000/01/rdf-schema#subClassOf:string[]","hasDirectParents:string[]","imported:string[]","ontologyIri:string[]","iri","hierarchicalAncestor:string[]","relatedFrom:string[]","numDescendants:string[]","isObsolete:string[]","label:string[]","ontologyPreferredPrefix:string[]","directAncestor:string[]","curie:string[]","shortForm:string[]","ontologyId:string[]","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type:string[]" -"reified-bnode+class+http://example.com/reified-bnode#cell","OntologyEntity|OntologyClass","{""iri"":""http://example.com/reified-bnode#cell"",""type"":[""class"",""entity""],""curie"":{""type"":[""literal""],""value"":""cell""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""hierarchicalAncestor"":[],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Class"",""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""cell""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""reified-bnode""},""ontologyIri"":{""type"":[""literal""],""value"":""http://example.com/reified-bnode""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""reified-bnode""},""relatedFrom"":{""property"":""http://example.com/reified-bnode#part_of"",""value"":""http://example.com/reified-bnode#cell_part"",""type"":[""related""],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""cell""},""isDefiningOntology"":false,""appearsIn"":[""reified-bnode""],""linkedEntities"":{""http://example.com/reified-bnode#part_of"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""part:of""},""type"":[""property"",""objectProperty"",""entity""]},""http://example.com/reified-bnode#cell_part"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""cell_part""},""curie"":{""type"":[""literal""],""value"":""cell:part""},""type"":[""class"",""entity""]}}}","false","false","false","false","false","","","0.0","class|entity","","","false","false","http://example.com/reified-bnode","http://example.com/reified-bnode#cell","","http://example.com/reified-bnode#cell_part","0.0","false","cell","reified-bnode","","cell","cell","reified-bnode","http://www.w3.org/2002/07/owl#Class" -"reified-bnode+class+http://example.com/reified-bnode#cell_part","OntologyEntity|OntologyClass","{""iri"":""http://example.com/reified-bnode#cell_part"",""type"":[""class"",""entity""],""curie"":{""type"":[""literal""],""value"":""cell:part""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""hierarchicalAncestor"":[],""hierarchicalProperty"":{""type"":[""literal""],""value"":""http://www.w3.org/2000/01/rdf-schema#subClassOf""},""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Class"",""http://www.w3.org/2000/01/rdf-schema#subClassOf"":[{""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},{""type"":[""reification""],""value"":{""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},""axioms"":[{""http://www.w3.org/2000/01/rdf-schema#comment"":{""type"":[""literal""],""value"":""This is an annotation on a property with a bnode value""}}]}],""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""cell_part""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""reified-bnode""},""ontologyIri"":{""type"":[""literal""],""value"":""http://example.com/reified-bnode""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""reified-bnode""},""relatedTo"":{""property"":""http://example.com/reified-bnode#part_of"",""value"":""http://example.com/reified-bnode#cell"",""type"":[""related""],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""cell_part""},""isDefiningOntology"":false,""appearsIn"":[""reified-bnode""],""linkedEntities"":{""http://example.com/reified-bnode#part_of"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""part:of""},""type"":[""property"",""objectProperty"",""entity""]},""http://example.com/reified-bnode#cell"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""cell""},""curie"":{""type"":[""literal""],""value"":""cell""},""type"":[""class"",""entity""]}}}","false","false","false","false","false","","http://www.w3.org/2000/01/rdf-schema#subClassOf","0.0","class|entity","http://example.com/reified-bnode#cell","","false","false","http://example.com/reified-bnode","http://example.com/reified-bnode#cell_part","","","0.0","false","cell_part","reified-bnode","","cell:part","cell_part","reified-bnode","http://www.w3.org/2002/07/owl#Class" +"reified-bnode+class+http://example.com/reified-bnode#cell","OntologyEntity|OntologyClass","{""iri"":""http://example.com/reified-bnode#cell"",""type"":[""class"",""entity""],""curie"":{""type"":[""literal""],""value"":""cell""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""hierarchicalAncestor"":[],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Class"",""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""cell""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""reified-bnode""},""ontologyIri"":{""type"":[""literal""],""value"":""http://example.com/reified-bnode""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""reified-bnode""},""relatedFrom"":{""property"":""http://example.com/reified-bnode#part_of"",""value"":""http://example.com/reified-bnode#cell_part"",""type"":[""related""],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""cell""},""isDefiningOntology"":false,""appearsIn"":[""reified-bnode""],""linkedEntities"":{""http://example.com/reified-bnode#part_of"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""part_of""},""type"":[""property"",""objectProperty"",""entity""]},""http://example.com/reified-bnode#cell_part"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""cell_part""},""curie"":{""type"":[""literal""],""value"":""cell_part""},""type"":[""class"",""entity""]}}}","false","false","false","false","false","","","0.0","class|entity","","","false","false","http://example.com/reified-bnode","http://example.com/reified-bnode#cell","","http://example.com/reified-bnode#cell_part","0.0","false","cell","reified-bnode","","cell","cell","reified-bnode","http://www.w3.org/2002/07/owl#Class" +"reified-bnode+class+http://example.com/reified-bnode#cell_part","OntologyEntity|OntologyClass","{""iri"":""http://example.com/reified-bnode#cell_part"",""type"":[""class"",""entity""],""curie"":{""type"":[""literal""],""value"":""cell_part""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""hierarchicalAncestor"":[],""hierarchicalProperty"":{""type"":[""literal""],""value"":""http://www.w3.org/2000/01/rdf-schema#subClassOf""},""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Class"",""http://www.w3.org/2000/01/rdf-schema#subClassOf"":[{""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},{""type"":[""reification""],""value"":{""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},""axioms"":[{""http://www.w3.org/2000/01/rdf-schema#comment"":{""type"":[""literal""],""value"":""This is an annotation on a property with a bnode value""}}]}],""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""cell_part""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""reified-bnode""},""ontologyIri"":{""type"":[""literal""],""value"":""http://example.com/reified-bnode""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""reified-bnode""},""relatedTo"":{""property"":""http://example.com/reified-bnode#part_of"",""value"":""http://example.com/reified-bnode#cell"",""type"":[""related""],""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#Restriction"",""http://www.w3.org/2002/07/owl#onProperty"":""http://example.com/reified-bnode#part_of"",""http://www.w3.org/2002/07/owl#someValuesFrom"":""http://example.com/reified-bnode#cell"",""isObsolete"":false},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""cell_part""},""isDefiningOntology"":false,""appearsIn"":[""reified-bnode""],""linkedEntities"":{""http://example.com/reified-bnode#part_of"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""part_of""},""curie"":{""type"":[""literal""],""value"":""part_of""},""type"":[""property"",""objectProperty"",""entity""]},""http://example.com/reified-bnode#cell"":{""numAppearsIn"":1.0,""hasLocalDefinition"":true,""label"":{""type"":[""literal""],""value"":""cell""},""curie"":{""type"":[""literal""],""value"":""cell""},""type"":[""class"",""entity""]}}}","false","false","false","false","false","","http://www.w3.org/2000/01/rdf-schema#subClassOf","0.0","class|entity","http://example.com/reified-bnode#cell","","false","false","http://example.com/reified-bnode","http://example.com/reified-bnode#cell_part","","","0.0","false","cell_part","reified-bnode","","cell_part","cell_part","reified-bnode","http://www.w3.org/2002/07/owl#Class" diff --git a/testcases_expected_output/reification/reified-bnode/reified-bnode_properties.csv b/testcases_expected_output/reification/reified-bnode/reified-bnode_properties.csv index 9de4e4aed..2e8d16532 100644 --- a/testcases_expected_output/reification/reified-bnode/reified-bnode_properties.csv +++ b/testcases_expected_output/reification/reified-bnode/reified-bnode_properties.csv @@ -1,2 +1,2 @@ "id:ID",":LABEL","_json","isPreferredRoot:string[]","iri","hasDirectChildren:string[]","hasHierarchicalParents:string[]","hasHierarchicalChildren:string[]","isDefiningOntology:string[]","linkedEntities:string[]","numDescendants:string[]","numHierarchicalDescendants:string[]","isObsolete:string[]","label:string[]","type:string[]","ontologyPreferredPrefix:string[]","directAncestor:string[]","curie:string[]","hasDirectParents:string[]","imported:string[]","shortForm:string[]","ontologyId:string[]","ontologyIri:string[]","http__//www.w3.org/1999/02/22-rdf-syntax-ns#type:string[]" -"reified-bnode+property+http://example.com/reified-bnode#part_of","OntologyEntity|OntologyProperty","{""iri"":""http://example.com/reified-bnode#part_of"",""type"":[""property"",""objectProperty"",""entity""],""curie"":{""type"":[""literal""],""value"":""part:of""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#ObjectProperty"",""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""part_of""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""reified-bnode""},""ontologyIri"":{""type"":[""literal""],""value"":""http://example.com/reified-bnode""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""reified-bnode""},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""part_of""},""isDefiningOntology"":false,""appearsIn"":[""reified-bnode""],""linkedEntities"":{}}","false","http://example.com/reified-bnode#part_of","false","false","false","false","","0.0","0.0","false","part_of","property|objectProperty|entity","reified-bnode","","part:of","false","false","part_of","reified-bnode","http://example.com/reified-bnode","http://www.w3.org/2002/07/owl#ObjectProperty" +"reified-bnode+property+http://example.com/reified-bnode#part_of","OntologyEntity|OntologyProperty","{""iri"":""http://example.com/reified-bnode#part_of"",""type"":[""property"",""objectProperty"",""entity""],""curie"":{""type"":[""literal""],""value"":""part_of""},""directAncestor"":[],""hasDirectChildren"":false,""hasDirectParents"":false,""hasHierarchicalChildren"":false,""hasHierarchicalParents"":false,""http://www.w3.org/1999/02/22-rdf-syntax-ns#type"":""http://www.w3.org/2002/07/owl#ObjectProperty"",""imported"":false,""isObsolete"":false,""isPreferredRoot"":false,""label"":{""type"":[""literal""],""value"":""part_of""},""numDescendants"":0.0,""numHierarchicalDescendants"":0.0,""ontologyId"":{""type"":[""literal""],""value"":""reified-bnode""},""ontologyIri"":{""type"":[""literal""],""value"":""http://example.com/reified-bnode""},""ontologyPreferredPrefix"":{""type"":[""literal""],""value"":""reified-bnode""},""searchableAnnotationValues"":false,""shortForm"":{""type"":[""literal""],""value"":""part_of""},""isDefiningOntology"":false,""appearsIn"":[""reified-bnode""],""linkedEntities"":{}}","false","http://example.com/reified-bnode#part_of","false","false","false","false","","0.0","0.0","false","part_of","property|objectProperty|entity","reified-bnode","","part_of","false","false","part_of","reified-bnode","http://example.com/reified-bnode","http://www.w3.org/2002/07/owl#ObjectProperty" diff --git a/testcases_expected_output_api/ontologies.json b/testcases_expected_output_api/ontologies.json index 4fcd1f0c3..b6a480103 100644 --- a/testcases_expected_output_api/ontologies.json +++ b/testcases_expected_output_api/ontologies.json @@ -583,6 +583,100 @@ "status": "LOADED", "updated": "" }, + { + "_links": { + "individuals": { + "href": "/api/ontologies/max-cardinality-ttl/individuals" + }, + "properties": { + "href": "/api/ontologies/max-cardinality-ttl/properties" + }, + "self": { + "href": "/api/ontologies/max-cardinality-ttl?lang=en" + }, + "terms": { + "href": "/api/ontologies/max-cardinality-ttl/terms" + } + }, + "baseUris": [], + "config": { + "allowDownload": false, + "baseUris": [], + "creators": [], + "definitionProperties": [], + "fileLocation": "./testcases/class-expression-issues/max-cardinality.ttl", + "hiddenProperties": [], + "hierarchicalProperties": [], + "id": "max-cardinality-ttl", + "isSkos": false, + "labelProperty": "http://www.w3.org/2000/01/rdf-schema#label", + "namespace": "max-cardinality-ttl", + "oboSlims": false, + "preferredPrefix": "max-cardinality-ttl", + "preferredRootTerms": [], + "synonymProperties": [] + }, + "lang": "en", + "languages": [ + "en" + ], + "loadAttempts": 0, + "loaded": "", + "message": "", + "numberOfIndividuals": 0, + "numberOfProperties": 1, + "numberOfTerms": 1, + "ontologyId": "max-cardinality-ttl", + "status": "LOADED", + "updated": "" + }, + { + "_links": { + "individuals": { + "href": "/api/ontologies/max-cardinality/individuals" + }, + "properties": { + "href": "/api/ontologies/max-cardinality/properties" + }, + "self": { + "href": "/api/ontologies/max-cardinality?lang=en" + }, + "terms": { + "href": "/api/ontologies/max-cardinality/terms" + } + }, + "baseUris": [], + "config": { + "allowDownload": false, + "baseUris": [], + "creators": [], + "definitionProperties": [], + "fileLocation": "./testcases/class-expression-issues/max-cardinality.owl", + "hiddenProperties": [], + "hierarchicalProperties": [], + "id": "max-cardinality", + "isSkos": false, + "labelProperty": "http://www.w3.org/2000/01/rdf-schema#label", + "namespace": "max-cardinality", + "oboSlims": false, + "preferredPrefix": "max-cardinality", + "preferredRootTerms": [], + "synonymProperties": [] + }, + "lang": "en", + "languages": [ + "en" + ], + "loadAttempts": 0, + "loaded": "", + "message": "", + "numberOfIndividuals": 0, + "numberOfProperties": 1, + "numberOfTerms": 1, + "ontologyId": "max-cardinality", + "status": "LOADED", + "updated": "" + }, { "_links": { "individuals": { diff --git a/testcases_expected_output_api/v2/ontologies.json b/testcases_expected_output_api/v2/ontologies.json index 65577767a..5b7b69775 100644 --- a/testcases_expected_output_api/v2/ontologies.json +++ b/testcases_expected_output_api/v2/ontologies.json @@ -151,72 +151,6 @@ "ontology" ] }, - { - "base_uri": [ - "http://exmpl.org/xmpl/" - ], - "description": "This config will use the defined label_property as label for a class. In OLS4 the value of label_property is a collection.", - "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "http://www.w3.org/2002/07/owl#Ontology", - "imported": false, - "iri": "http://exmpl.org/xmpl/xmpl.owl", - "isObsolete": false, - "label_property": [ - "http://exmpl.org/xmpl/Other_preferred_name", - "http://exmpl.org/xmpl/Preferred_name" - ], - "language": "en", - "linkedEntities": { - "http://exmpl.org/xmpl/Preferred_name": { - "curie": "XMPL:Preferred_name", - "definedBy": [ - "xmpl" - ], - "hasLocalDefinition": true, - "label": "XMPL_Preferred_name", - "numAppearsIn": 1.0, - "type": [ - "annotationProperty", - "entity", - "property" - ] - }, - "http://exmpl.org/xmpl/Synonym": { - "curie": "XMPL:Synonym", - "definedBy": [ - "xmpl" - ], - "hasLocalDefinition": true, - "label": "XMPL_Synonym", - "numAppearsIn": 1.0, - "type": [ - "annotationProperty", - "entity", - "property" - ] - } - }, - "numDescendants": 0.0, - "numHierarchicalDescendants": 0.0, - "numberOfClasses": "3", - "numberOfEntities": "5", - "numberOfIndividuals": "0", - "numberOfProperties": "2", - "ontologyId": "xmpl", - "ontology_purl": "./testcases/iri-labels/user-defined-pref-label.owl", - "preferredPrefix": "XMPL", - "reasoner": "none", - "searchableAnnotationValues": [ - false - ], - "synonym_property": [ - "http://exmpl.org/xmpl/Synonym" - ], - "title": "Example terminology with user defined pref label", - "type": [ - "ontology" - ], - "uri": "http://exmpl.org/xmpl/" - }, { "base_uri": [ "http://www.geneontology.org/formats/oboInOwl#" @@ -604,7 +538,7 @@ ] }, "http://purl.obolibrary.org/obo/ms#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, @@ -729,30 +663,6 @@ "ontology" ] }, - { - "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "http://www.w3.org/2002/07/owl#Ontology", - "http://www.w3.org/2002/07/owl#versionIRI": "http://www.ebi.ac.uk/testcases/individuals/v.0.0.1/anonymous-types-with-inverse.owl", - "imported": false, - "iri": "http://www.ebi.ac.uk/testcases/individuals/anonymous-types-with-inverse.owl", - "isObsolete": false, - "language": "en", - "linkedEntities": {}, - "numDescendants": 0.0, - "numHierarchicalDescendants": 0.0, - "numberOfClasses": "1", - "numberOfEntities": "4", - "numberOfIndividuals": "1", - "numberOfProperties": "2", - "ontologyId": "individuals-anonymous-types-with-inverse", - "ontology_purl": "./testcases/individuals/anonymous-types-with-inverse.owl", - "preferredPrefix": "individuals-anonymous-types-with-inverse", - "searchableAnnotationValues": [ - false - ], - "type": [ - "ontology" - ] - }, { "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "http://www.w3.org/2002/07/owl#Ontology", "http://www.w3.org/2002/07/owl#versionIRI": "http://www.ebi.ac.uk/testcases/owl2primer/v.0.0.1/datatype-enumeration.owl", @@ -899,5 +809,51 @@ "type": [ "ontology" ] + }, + { + "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "http://www.w3.org/2002/07/owl#Ontology", + "imported": false, + "iri": "http://www.ebi.ac.uk/testcases/class-expression-issues/maxCardinality.owl", + "isObsolete": false, + "language": "en", + "linkedEntities": {}, + "numDescendants": 0.0, + "numHierarchicalDescendants": 0.0, + "numberOfClasses": "1", + "numberOfEntities": "2", + "numberOfIndividuals": "0", + "numberOfProperties": "1", + "ontologyId": "max-cardinality", + "ontology_purl": "./testcases/class-expression-issues/max-cardinality.owl", + "preferredPrefix": "max-cardinality", + "searchableAnnotationValues": [ + false + ], + "type": [ + "ontology" + ] + }, + { + "http://www.w3.org/1999/02/22-rdf-syntax-ns#type": "http://www.w3.org/2002/07/owl#Ontology", + "imported": false, + "iri": "http://www.ebi.ac.uk/testcases/class-expression-issues/maxCardinality.owl", + "isObsolete": false, + "language": "en", + "linkedEntities": {}, + "numDescendants": 0.0, + "numHierarchicalDescendants": 0.0, + "numberOfClasses": "1", + "numberOfEntities": "2", + "numberOfIndividuals": "0", + "numberOfProperties": "1", + "ontologyId": "max-cardinality-ttl", + "ontology_purl": "./testcases/class-expression-issues/max-cardinality.ttl", + "preferredPrefix": "max-cardinality-ttl", + "searchableAnnotationValues": [ + false + ], + "type": [ + "ontology" + ] } ] \ No newline at end of file diff --git a/testcases_expected_output_api/v2/ontologies/duo/classes.json b/testcases_expected_output_api/v2/ontologies/duo/classes.json index 4015e94bc..f1087ff03 100644 --- a/testcases_expected_output_api/v2/ontologies/duo/classes.json +++ b/testcases_expected_output_api/v2/ontologies/duo/classes.json @@ -3,7 +3,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000008", + "curie": "APOLLO_SV:00000008", "definition": "A planned process that has specified output a software product and that involves the creation of source code.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -214,7 +214,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000032", + "curie": "APOLLO_SV:00000032", "definition": "A measurement datum that is the output of counting.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -266,7 +266,7 @@ "label": "count", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000033": { - "curie": "APOLLO:SV_00000033", + "curie": "APOLLO_SV:00000033", "hasLocalDefinition": true, "label": "counting", "numAppearsIn": 1.0, @@ -410,7 +410,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000033", + "curie": "APOLLO_SV:00000033", "definition": "The planned process of finding the number of elements in a finite set of objects.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -464,7 +464,7 @@ "url": "http://en.wikipedia.org/wiki/Counting" }, "http://purl.obolibrary.org/obo/APOLLO_SV_00000032": { - "curie": "APOLLO:SV_00000032", + "curie": "APOLLO_SV:00000032", "hasLocalDefinition": true, "label": "count", "numAppearsIn": 1.0, @@ -599,7 +599,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000522", + "curie": "APOLLO_SV:00000522", "definition": [ "A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.", "Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based" @@ -867,7 +867,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000524", + "curie": "APOLLO_SV:00000524", "definition": [ "A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.", "It's compiling \"software\" (scare quotes) and not \"source code\" because you can compile Java bytecode to machine code, and Java bytecode is not technically \"source code\". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).", @@ -941,7 +941,7 @@ "label": "compiling software", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000008": { - "curie": "APOLLO:SV_00000008", + "curie": "APOLLO_SV:00000008", "hasLocalDefinition": true, "label": "software development", "numAppearsIn": 1.0, @@ -1109,7 +1109,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000796", + "curie": "APOLLO_SV:00000796", "definition": "A planned process that has a data set as its specified output.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -20289,7 +20289,7 @@ "label": "data item", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000522": { - "curie": "APOLLO:SV_00000522", + "curie": "APOLLO_SV:00000522", "hasLocalDefinition": true, "label": "source code repository", "numAppearsIn": 1.0, @@ -24297,7 +24297,7 @@ "label": "source code module", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000522": { - "curie": "APOLLO:SV_00000522", + "curie": "APOLLO_SV:00000522", "hasLocalDefinition": true, "label": "source code repository", "numAppearsIn": 1.0, diff --git a/testcases_expected_output_api/v2/ontologies/duo/entities.json b/testcases_expected_output_api/v2/ontologies/duo/entities.json index f8a308c0c..27a4a3d72 100644 --- a/testcases_expected_output_api/v2/ontologies/duo/entities.json +++ b/testcases_expected_output_api/v2/ontologies/duo/entities.json @@ -3,7 +3,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000008", + "curie": "APOLLO_SV:00000008", "definition": "A planned process that has specified output a software product and that involves the creation of source code.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -214,7 +214,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000032", + "curie": "APOLLO_SV:00000032", "definition": "A measurement datum that is the output of counting.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -266,7 +266,7 @@ "label": "count", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000033": { - "curie": "APOLLO:SV_00000033", + "curie": "APOLLO_SV:00000033", "hasLocalDefinition": true, "label": "counting", "numAppearsIn": 1.0, @@ -410,7 +410,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000033", + "curie": "APOLLO_SV:00000033", "definition": "The planned process of finding the number of elements in a finite set of objects.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -464,7 +464,7 @@ "url": "http://en.wikipedia.org/wiki/Counting" }, "http://purl.obolibrary.org/obo/APOLLO_SV_00000032": { - "curie": "APOLLO:SV_00000032", + "curie": "APOLLO_SV:00000032", "hasLocalDefinition": true, "label": "count", "numAppearsIn": 1.0, @@ -599,7 +599,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000522", + "curie": "APOLLO_SV:00000522", "definition": [ "A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.", "Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based" @@ -867,7 +867,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000524", + "curie": "APOLLO_SV:00000524", "definition": [ "A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.", "It's compiling \"software\" (scare quotes) and not \"source code\" because you can compile Java bytecode to machine code, and Java bytecode is not technically \"source code\". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).", @@ -941,7 +941,7 @@ "label": "compiling software", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000008": { - "curie": "APOLLO:SV_00000008", + "curie": "APOLLO_SV:00000008", "hasLocalDefinition": true, "label": "software development", "numAppearsIn": 1.0, @@ -1109,7 +1109,7 @@ "appearsIn": [ "duo" ], - "curie": "APOLLO:SV_00000796", + "curie": "APOLLO_SV:00000796", "definition": "A planned process that has a data set as its specified output.", "definitionProperty": "http://purl.obolibrary.org/obo/IAO_0000115", "directAncestor": [ @@ -21757,7 +21757,7 @@ "label": "data item", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000522": { - "curie": "APOLLO:SV_00000522", + "curie": "APOLLO_SV:00000522", "hasLocalDefinition": true, "label": "source code repository", "numAppearsIn": 1.0, @@ -25836,7 +25836,7 @@ "label": "source code module", "linkedEntities": { "http://purl.obolibrary.org/obo/APOLLO_SV_00000522": { - "curie": "APOLLO:SV_00000522", + "curie": "APOLLO_SV:00000522", "hasLocalDefinition": true, "label": "source code repository", "numAppearsIn": 1.0, @@ -73904,7 +73904,7 @@ ] }, "http://www.geneontology.org/formats/oboInOwl#created_by": { - "curie": "created:by", + "curie": "created_by", "hasLocalDefinition": true, "label": "created_by", "numAppearsIn": 1.0, @@ -78651,7 +78651,7 @@ "appearsIn": [ "duo" ], - "curie": "created:by", + "curie": "created_by", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -78681,7 +78681,7 @@ "appearsIn": [ "duo" ], - "curie": "creation:date", + "curie": "creation_date", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/duo/properties.json b/testcases_expected_output_api/v2/ontologies/duo/properties.json index 76b9ac0f3..1b98781a2 100644 --- a/testcases_expected_output_api/v2/ontologies/duo/properties.json +++ b/testcases_expected_output_api/v2/ontologies/duo/properties.json @@ -7781,7 +7781,7 @@ ] }, "http://www.geneontology.org/formats/oboInOwl#created_by": { - "curie": "created:by", + "curie": "created_by", "hasLocalDefinition": true, "label": "created_by", "numAppearsIn": 1.0, @@ -11227,7 +11227,7 @@ "appearsIn": [ "duo" ], - "curie": "created:by", + "curie": "created_by", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -11257,7 +11257,7 @@ "appearsIn": [ "duo" ], - "curie": "creation:date", + "curie": "creation_date", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/entities.json b/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/entities.json index 680873023..9f9b93e38 100644 --- a/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/entities.json +++ b/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/entities.json @@ -226,7 +226,7 @@ ] }, "http://www.ebi.ac.uk/efo/EFO_URI": { - "curie": "EFO:URI", + "curie": "EFO_URI", "hasLocalDefinition": true, "label": "EFO_URI", "numAppearsIn": 1.0, @@ -380,7 +380,7 @@ ] }, "http://www.ebi.ac.uk/efo/EFO_URI": { - "curie": "EFO:URI", + "curie": "EFO_URI", "hasLocalDefinition": true, "label": "EFO_URI", "numAppearsIn": 1.0, @@ -432,7 +432,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "EFO:URI", + "curie": "EFO_URI", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -5523,7 +5523,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "date:retrieved", + "curie": "date_retrieved", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -5553,7 +5553,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "depicted:by", + "curie": "depicted_by", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -5583,7 +5583,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "external:class", + "curie": "external_class", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -5613,7 +5613,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "external:ontology", + "curie": "external_ontology", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/properties.json b/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/properties.json index e4e0c784a..b93d6e85e 100644 --- a/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/properties.json +++ b/testcases_expected_output_api/v2/ontologies/efo-hierarchical-properties/properties.json @@ -226,7 +226,7 @@ ] }, "http://www.ebi.ac.uk/efo/EFO_URI": { - "curie": "EFO:URI", + "curie": "EFO_URI", "hasLocalDefinition": true, "label": "EFO_URI", "numAppearsIn": 1.0, @@ -380,7 +380,7 @@ ] }, "http://www.ebi.ac.uk/efo/EFO_URI": { - "curie": "EFO:URI", + "curie": "EFO_URI", "hasLocalDefinition": true, "label": "EFO_URI", "numAppearsIn": 1.0, @@ -432,7 +432,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "EFO:URI", + "curie": "EFO_URI", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -1002,7 +1002,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "date:retrieved", + "curie": "date_retrieved", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -1032,7 +1032,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "depicted:by", + "curie": "depicted_by", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -1062,7 +1062,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "external:class", + "curie": "external_class", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -1092,7 +1092,7 @@ "appearsIn": [ "efo-hierarchical-properties" ], - "curie": "external:ontology", + "curie": "external_ontology", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/gitissue502/classes.json b/testcases_expected_output_api/v2/ontologies/gitissue502/classes.json index 1275a33c7..abc5542c6 100644 --- a/testcases_expected_output_api/v2/ontologies/gitissue502/classes.json +++ b/testcases_expected_output_api/v2/ontologies/gitissue502/classes.json @@ -23485,7 +23485,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -26632,7 +26632,7 @@ "url": "http://purl.obolibrary.org/obo/NCIT_C26836" }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -27310,7 +27310,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -29860,7 +29860,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -34020,7 +34020,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#should_conform_to": { - "curie": "should:conform_to", + "curie": "should_conform_to", "hasLocalDefinition": true, "label": "should_conform_to", "numAppearsIn": 1.0, @@ -34931,7 +34931,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -36286,7 +36286,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -40128,7 +40128,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, diff --git a/testcases_expected_output_api/v2/ontologies/gitissue502/entities.json b/testcases_expected_output_api/v2/ontologies/gitissue502/entities.json index 79f0e560b..cb46fb03c 100644 --- a/testcases_expected_output_api/v2/ontologies/gitissue502/entities.json +++ b/testcases_expected_output_api/v2/ontologies/gitissue502/entities.json @@ -24409,7 +24409,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -27556,7 +27556,7 @@ "url": "http://purl.obolibrary.org/obo/NCIT_C26836" }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -28234,7 +28234,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -30784,7 +30784,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -34944,7 +34944,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#should_conform_to": { - "curie": "should:conform_to", + "curie": "should_conform_to", "hasLocalDefinition": true, "label": "should_conform_to", "numAppearsIn": 1.0, @@ -35855,7 +35855,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -37210,7 +37210,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -41052,7 +41052,7 @@ ] }, "http://purl.obolibrary.org/obo/mondo#excluded_subClassOf": { - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasLocalDefinition": true, "label": "excluded_subClassOf", "numAppearsIn": 1.0, @@ -83602,7 +83602,7 @@ "appearsIn": [ "gitissue502" ], - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -83692,7 +83692,7 @@ "appearsIn": [ "gitissue502" ], - "curie": "should:conform_to", + "curie": "should_conform_to", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/gitissue502/properties.json b/testcases_expected_output_api/v2/ontologies/gitissue502/properties.json index d1064a214..16c90d93a 100644 --- a/testcases_expected_output_api/v2/ontologies/gitissue502/properties.json +++ b/testcases_expected_output_api/v2/ontologies/gitissue502/properties.json @@ -19805,7 +19805,7 @@ "appearsIn": [ "gitissue502" ], - "curie": "excluded:subClassOf", + "curie": "excluded_subClassOf", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -19895,7 +19895,7 @@ "appearsIn": [ "gitissue502" ], - "curie": "should:conform_to", + "curie": "should_conform_to", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/partof/classes.json b/testcases_expected_output_api/v2/ontologies/partof/classes.json index 03a5db5bc..e0a0012b1 100644 --- a/testcases_expected_output_api/v2/ontologies/partof/classes.json +++ b/testcases_expected_output_api/v2/ontologies/partof/classes.json @@ -28,7 +28,7 @@ ] }, "http://purl.obolibrary.org/obo/ms#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, @@ -110,7 +110,7 @@ ] }, "http://purl.obolibrary.org/obo/ms#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, diff --git a/testcases_expected_output_api/v2/ontologies/partof/entities.json b/testcases_expected_output_api/v2/ontologies/partof/entities.json index 7300bee97..a6f83f319 100644 --- a/testcases_expected_output_api/v2/ontologies/partof/entities.json +++ b/testcases_expected_output_api/v2/ontologies/partof/entities.json @@ -62,7 +62,7 @@ ] }, "http://purl.obolibrary.org/obo/ms#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, @@ -144,7 +144,7 @@ ] }, "http://purl.obolibrary.org/obo/ms#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, @@ -327,7 +327,7 @@ "appearsIn": [ "partof" ], - "curie": "part:of", + "curie": "part_of", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/partof/properties.json b/testcases_expected_output_api/v2/ontologies/partof/properties.json index 21d0f6289..46c7edd64 100644 --- a/testcases_expected_output_api/v2/ontologies/partof/properties.json +++ b/testcases_expected_output_api/v2/ontologies/partof/properties.json @@ -37,7 +37,7 @@ "appearsIn": [ "partof" ], - "curie": "part:of", + "curie": "part_of", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/reified-bnode/classes.json b/testcases_expected_output_api/v2/ontologies/reified-bnode/classes.json index b39680cf4..776065b52 100644 --- a/testcases_expected_output_api/v2/ontologies/reified-bnode/classes.json +++ b/testcases_expected_output_api/v2/ontologies/reified-bnode/classes.json @@ -17,7 +17,7 @@ "label": "cell", "linkedEntities": { "http://example.com/reified-bnode#cell_part": { - "curie": "cell:part", + "curie": "cell_part", "hasLocalDefinition": true, "label": "cell_part", "numAppearsIn": 1.0, @@ -27,7 +27,7 @@ ] }, "http://example.com/reified-bnode#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, @@ -65,7 +65,7 @@ "appearsIn": [ "reified-bnode" ], - "curie": "cell:part", + "curie": "cell_part", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -114,7 +114,7 @@ ] }, "http://example.com/reified-bnode#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, diff --git a/testcases_expected_output_api/v2/ontologies/reified-bnode/entities.json b/testcases_expected_output_api/v2/ontologies/reified-bnode/entities.json index f61f2d945..1f763aab8 100644 --- a/testcases_expected_output_api/v2/ontologies/reified-bnode/entities.json +++ b/testcases_expected_output_api/v2/ontologies/reified-bnode/entities.json @@ -17,7 +17,7 @@ "label": "cell", "linkedEntities": { "http://example.com/reified-bnode#cell_part": { - "curie": "cell:part", + "curie": "cell_part", "hasLocalDefinition": true, "label": "cell_part", "numAppearsIn": 1.0, @@ -27,7 +27,7 @@ ] }, "http://example.com/reified-bnode#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, @@ -65,7 +65,7 @@ "appearsIn": [ "reified-bnode" ], - "curie": "cell:part", + "curie": "cell_part", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, @@ -114,7 +114,7 @@ ] }, "http://example.com/reified-bnode#part_of": { - "curie": "part:of", + "curie": "part_of", "hasLocalDefinition": true, "label": "part_of", "numAppearsIn": 1.0, @@ -152,7 +152,7 @@ "appearsIn": [ "reified-bnode" ], - "curie": "part:of", + "curie": "part_of", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/reified-bnode/properties.json b/testcases_expected_output_api/v2/ontologies/reified-bnode/properties.json index d20189ea8..d781ce107 100644 --- a/testcases_expected_output_api/v2/ontologies/reified-bnode/properties.json +++ b/testcases_expected_output_api/v2/ontologies/reified-bnode/properties.json @@ -3,7 +3,7 @@ "appearsIn": [ "reified-bnode" ], - "curie": "part:of", + "curie": "part_of", "hasDirectChildren": false, "hasDirectParents": false, "hasHierarchicalChildren": false, diff --git a/testcases_expected_output_api/v2/ontologies/xmpl/classes.json b/testcases_expected_output_api/v2/ontologies/xmpl/classes.json index a6471eafb..d71fd1521 100644 --- a/testcases_expected_output_api/v2/ontologies/xmpl/classes.json +++ b/testcases_expected_output_api/v2/ontologies/xmpl/classes.json @@ -26,7 +26,7 @@ ], "linkedEntities": { "http://exmpl.org/xmpl/Preferred_name": { - "curie": "XMPL:Preferred_name", + "curie": "XMPL_Preferred_name", "definedBy": [ "xmpl" ], @@ -105,7 +105,7 @@ ], "linkedEntities": { "http://exmpl.org/xmpl/Preferred_name": { - "curie": "XMPL:Preferred_name", + "curie": "XMPL_Preferred_name", "definedBy": [ "xmpl" ],