diff --git a/eva-submission-docker/postgres_docker/metadata.sql b/eva-submission-docker/postgres_docker/metadata.sql index c4959f0..6ab9dd6 100644 --- a/eva-submission-docker/postgres_docker/metadata.sql +++ b/eva-submission-docker/postgres_docker/metadata.sql @@ -778,7 +778,7 @@ AS SELECT evapro.project.project_accession, LEFT JOIN evapro.project_eva_submission project_eva_submission(project_accession, eva_submission_id, eload_id, old_eva_submission_id) USING (project_accession) LEFT JOIN evapro.project_experiment USING (project_accession) LEFT JOIN ( SELECT evapro.project_publication.project_accession, - string_agg(evapro.project_publication.id::text, ', '::text) AS ids + string_agg(evapro.project_publication.db::text||':'||evapro.project_publication.id::text, ', '::text) AS ids FROM evapro.project_publication GROUP BY evapro.project_publication.project_accession) c(project_accession_1, ids) ON c.project_accession_1::text = project.project_accession::text LEFT JOIN ( SELECT evapro.project_reference.project_accession, @@ -839,15 +839,24 @@ INSERT INTO evapro.supported_assembly_tracker (taxonomy_id, "source", assembly_i VALUES(4006, 'Ensembl', 'GCA_000224295.2', true, '2021-01-01'); INSERT INTO evapro.project (project_accession, center_name, alias, title, description, "scope", material, selection, "type", secondary_study_id, hold_date, source_type, eva_description, eva_center_name, eva_submitter_link, ena_status, eva_status, ena_timestamp, eva_timestamp, study_type) -values ('PRJEB62432', 'NDSU', 'IFQT', 'Improvement of Flax Quantitative Traits', 'The study was done to analyze the genetic diversity, identify SNPs and genes associated to specific traits and optimize genomic selection models in NDSU Flax core collection.', 'multi-isolate', 'DNA', 'other', 'Other', 'ERP147519', NULL, 'Germline', NULL, NULL, NULL, 4, 1, NULL, NULL, 'Control Set'); +VALUES ('PRJEB62432', 'NDSU', 'IFQT', 'Improvement of Flax Quantitative Traits', 'The study was done to analyze the genetic diversity, identify SNPs and genes associated to specific traits and optimize genomic selection models in NDSU Flax core collection.', 'multi-isolate', 'DNA', 'other', 'Other', 'ERP147519', NULL, 'Germline', NULL, NULL, NULL, 4, 1, NULL, NULL, 'Control Set'); + +INSERT INTO evapro.project_taxonomy (project_accession, taxonomy_id) +VALUES ('PRJEB62432', 4006); + +-- required for web services to work, "temp1" name notwithstanding +INSERT INTO evapro.project_samples_temp1 (project_accession, sample_count) +VALUES ('PRJEB62432', 100); INSERT INTO evapro.dbxref (db, id, link_type, source_object) -VALUES ('doi', '10.3389/fgene.2023.1229741', 'publication', 'project'); +VALUES ('doi', '10.3389/fgene.2023.1229741', 'publication', 'project'), + ('PubMed', '37955008', 'publication', 'project'); INSERT INTO evapro.project_dbxref (project_accession, dbxref_id) -VALUES ('PRJEB62432', 1); +VALUES ('PRJEB62432', 1), + ('PRJEB62432', 2); ------ The following inserts are required to get the study to appear in the study browser +-- A valid submission status is required to get the study to appear in the study browser materialized view INSERT INTO evapro.eva_submission_status_cv (eva_submission_status_id, submission_status, description) VALUES (0,'Submission Defined','A submission has been initiated, but not files yet received'),