Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Create a dummy assembly report when none exists #186

Merged
merged 3 commits into from
Nov 30, 2023

Conversation

tcezard
Copy link
Member

@tcezard tcezard commented Nov 23, 2023

Also has some fixes for tests using unreliable API calls.

Create a dummy assembly report based solely on the provided fasta.
This method assume the fasta file contains INSDC sequence accession.
"""
contig_name_in_fasta = []
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Maybe contig_names_and_lengths or something similar

@tcezard tcezard merged commit 212a598 into EBIvariation:master Nov 30, 2023
4 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants