diff --git a/eva_submission/nextflow/remap_and_cluster.nf b/eva_submission/nextflow/remap_and_cluster.nf index d9b9941..59d0db8 100644 --- a/eva_submission/nextflow/remap_and_cluster.nf +++ b/eva_submission/nextflow/remap_and_cluster.nf @@ -127,7 +127,7 @@ process extract_vcf_from_mongo { output: // Only pass on the EVA vcf, dbSNP one will be empty - tuple val(source_assembly_accession), path(source_fasta), path("${source_assembly_accession}_eva.vcf"), emit: source_vcfs + tuple val(source_assembly_accession), path(source_fasta), path("${source_assembly_accession}*_eva.vcf"), emit: source_vcfs path "${source_assembly_accession}_vcf_extractor.log", emit: log_filename publishDir "$params.logs_dir", overwrite: true, mode: "copy", pattern: "*.log*"