From 31b47b4b2bc2c49332142e4d9e798d74b80aeaf1 Mon Sep 17 00:00:00 2001 From: Timothee Cezard Date: Tue, 26 Jul 2022 21:34:04 +0100 Subject: [PATCH] Make multiple workflow independent --- eva_vcf_merge/merge.py | 2 +- requirements.txt | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/eva_vcf_merge/merge.py b/eva_vcf_merge/merge.py index 0daf786..503e8a6 100644 --- a/eva_vcf_merge/merge.py +++ b/eva_vcf_merge/merge.py @@ -104,7 +104,7 @@ def generate_merge_pipeline(self, merge_type, vcf_groups, chunk_size): process_command=self.concat_command ) pipeline = NextFlowPipeline.join_pipelines(compress_pipeline, merge_pipeline) - full_pipeline = NextFlowPipeline.join_pipelines(full_pipeline, pipeline) + full_pipeline = NextFlowPipeline.join_pipelines(full_pipeline, pipeline, with_dependencies=False) merged_filenames[alias] = merged_filename return full_pipeline, merged_filenames diff --git a/requirements.txt b/requirements.txt index a7c8974..b6a2f67 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,3 +1,3 @@ -ebi_eva_common_pyutils>=0.3.15 +ebi_eva_common_pyutils>=0.3.22 pysam~=0.16 pytest~=6.2