From bc3661f6870837f65ac5b5cc765456018d2651bc Mon Sep 17 00:00:00 2001 From: Timothee Cezard Date: Mon, 23 Aug 2021 12:55:39 +0100 Subject: [PATCH] Update variant_remapping_tools/reads_to_remapped_variants.py Co-authored-by: April Shen --- variant_remapping_tools/reads_to_remapped_variants.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/variant_remapping_tools/reads_to_remapped_variants.py b/variant_remapping_tools/reads_to_remapped_variants.py index 1f94be7..87b7b82 100755 --- a/variant_remapping_tools/reads_to_remapped_variants.py +++ b/variant_remapping_tools/reads_to_remapped_variants.py @@ -29,7 +29,7 @@ def calculate_new_variant_definition(left_read, right_read, ref_fasta, original_ right_read.reference_start - left_read.reference_end).upper() if len(set(new_ref).difference(nucleotide_alphabet)) != 0 : - failure_reason = 'Reference Allele not in non ACGT' + failure_reason = 'Reference Allele not in ACGT' new_pos = left_read.reference_end + 1