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All_Covid_tools.yaml
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All_Covid_tools.yaml
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install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: true
tools:
- name: enumerate_charges
owner: bgruening
revisions:
- 2a868592ebcb
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: split_file_to_collection
owner: bgruening
revisions:
- e77b954f0da5
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: openbabel_compound_convert
owner: bgruening
revisions:
- e6011617c748
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: openbabel_compound_convert
owner: bgruening
revisions:
- e6011617c748
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: rdock_rbcavity
owner: bgruening
revisions:
- 5f73eb32ddbf
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: openbabel_compound_convert
owner: bgruening
revisions:
- e6011617c748
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: text_processing
owner: bgruening
revisions:
- fb4ff3c42cd3
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: split_file_to_collection
owner: bgruening
revisions:
- e77b954f0da5
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: rdock_rbdock
owner: bgruening
revisions:
- 5f291eef9ef3
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
owner: nml
revisions:
- 830961c48e42
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: rdock_sort_filter
owner: bgruening
revisions:
- 784a9f7f079e
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: split_file_to_collection
owner: bgruening
revisions:
- e77b954f0da5
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: sucos_max_score
owner: bgruening
revisions:
- 2f110aef9b53
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
owner: nml
revisions:
- 830961c48e42
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: split_file_to_collection
owner: bgruening
revisions:
- e77b954f0da5
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: xchem_transfs_scoring
owner: bgruening
revisions:
- de29b4f35536
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: text_processing
owner: bgruening
revisions:
- fb4ff3c42cd3
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: openbabel_filter
owner: bgruening
revisions:
- da0059ee548a
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: openbabel_change_title
owner: bgruening
revisions:
- 49d21d05f77c
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: jq
owner: iuc
revisions:
- 5ff75eb1a893
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
owner: nml
revisions:
- 830961c48e42
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: sdf_to_tab
owner: bgruening
revisions:
- 40ff81f67f5e
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: datamash_ops
owner: iuc
revisions:
- 562f3c677828
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
owner: iuc
revisions:
- a935cbdf1c0e
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
owner: iuc
revisions:
- edbb6c5028f5
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastqc
owner: devteam
revisions:
- 3e1cdf5406db
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
owner: iuc
revisions:
- 17e61517c166
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
owner: iuc
revisions:
- b2f1f75d49c4
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bwa
owner: devteam
revisions:
- 01ac0a5fedc3
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtool_filter2
owner: devteam
revisions:
- 56c31114ad4a
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: picard
owner: devteam
revisions:
- 6f9c0884a3e7
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_fastx
owner: iuc
revisions:
- a8d69aee190e
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: sra_tools
owner: iuc
revisions:
- aad3885b3216
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
owner: iuc
revisions:
- 1d8fe9bc4cb0
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: nanoplot
owner: iuc
revisions:
- 645159bcee2d
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastqc
owner: devteam
revisions:
- e7b2202befea
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: minimap2
owner: iuc
revisions:
- b3eab4b67562
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
owner: iuc
revisions:
- b2f1f75d49c4
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bwa
owner: devteam
revisions:
- 01ac0a5fedc3
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtool_filter2
owner: devteam
revisions:
- 649a225999a5
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: picard
owner: devteam
revisions:
- a1f0b3f4b781
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_fastx
owner: iuc
revisions:
- a8d69aee190e
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: unicycler
owner: iuc
revisions:
- 23300b42ca18
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: spades
owner: nml
revisions:
- b8c00ce5dfa0
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bandage
owner: iuc
revisions:
- b2860df42e16
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: ncbi_acc_download
owner: iuc
revisions:
- 1c58de56d587
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: picard
owner: devteam
revisions:
- 6f9c0884a3e7
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: text_processing
owner: bgruening
revisions:
- 0a8c6b61f0f4
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
owner: nml
revisions:
- 33151a38533a
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: mafft
owner: rnateam
revisions:
- c5908940967d
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasttree
owner: iuc
revisions:
- e005e659ae21
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: snpeff
owner: iuc
revisions:
- 74aebe30fb52
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
owner: iuc
revisions:
- 1d8fe9bc4cb0
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bwa
owner: devteam
revisions:
- 01ac0a5fedc3
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
owner: iuc
revisions:
- 3d93dd18d9f8
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtool_filter2
owner: devteam
revisions:
- 649a225999a5
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: samtools_stats
owner: devteam
revisions:
- 145f6d74ff5e
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: picard
owner: devteam
revisions:
- a1f0b3f4b781
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: lofreq_viterbi
owner: iuc
revisions:
- cdaab621d454
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: lofreq_call
owner: iuc
revisions:
- 03627f24605f
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: snpsift
owner: iuc
revisions:
- 2b3e65a4252f
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
owner: nml
revisions:
- 33151a38533a
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fastp
owner: iuc
revisions:
- 1d8fe9bc4cb0
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: snpeff
owner: iuc
revisions:
- 74aebe30fb52
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: multiqc
owner: iuc
revisions:
- 3d93dd18d9f8
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: bowtie2
owner: devteam
revisions:
- 749c918495f7
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: picard
owner: devteam
revisions:
- a1f0b3f4b781
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: lofreq_viterbi
owner: iuc
revisions:
- cdaab621d454
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: lofreq_call
owner: iuc
revisions:
- dfadc322b065
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: snpsift
owner: iuc
revisions:
- 2b3e65a4252f
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: collapse_collections
owner: nml
revisions:
- 33151a38533a
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: emboss_5
owner: devteam
revisions:
- dba489bfcd62
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: mafft
owner: rnateam
revisions:
- c5908940967d
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: emboss_5
owner: devteam
revisions:
- dba489bfcd62
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: mafft
owner: rnateam
revisions:
- c5908940967d
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: fasttree
owner: iuc
revisions:
- e005e659ae21
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: hyphy_gard
owner: iuc
revisions:
- 6283babe736e
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: hyphy_absrel
owner: iuc
revisions:
- f73435dc282b
tool_panel_section_label: COVID-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/
- name: sucos_max_score
owner: bgruening
revisions:
- bf99565cec1f
tool_panel_section_label: Covid-19
tool_shed_url: https://toolshed.g2.bx.psu.edu/