pyproject.toml

[project]
name = "mouselungseg"
dynamic = ["version"]
description = "YoloV8 model for the segmentation of the lungs in mice CT scans."
readme = "README.md"
requires-python = ">=3.9"
license = {file = "LICENSE"}
authors = [{ name = "Mallory Wittwer", email = "mallory.wittwer@epfl.ch" }]

classifiers = [
    "Development Status :: 2 - Pre-Alpha",
    "License :: OSI Approved :: BSD License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Topic :: Scientific/Engineering :: Image Processing",
]

dependencies = [
    "napari[all]>=0.4.16",
    "qtpy",
    "magicgui",
    "numpy",
    "pandas",
    "tifffile",
    "pooch==1.8.0",
    "scikit-image",
    "ultralytics",
    "opencv-contrib-python-headless"
]

[project.entry-points."napari.manifest"]
mouselungseg = "mouselungseg:napari.yaml"

[project.scripts]
mouselungseg_predict_image = "mouselungseg.cli:cli_predict_image"
mouselungseg_predict_folder = "mouselungseg.cli:cli_predict_folder"

[project.urls]
homepage = "https://github.com/EPFL-Center-for-Imaging/mouselungseg"
repository = "https://github.com/EPFL-Center-for-Imaging/mouselungseg"

[build-system]
requires = ["setuptools>=42.0.0", "wheel", "setuptools_scm"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = ["src"]

[tool.setuptools.package-data]
"*" = ["*.yaml"]

[tool.setuptools_scm]
write_to = "src/mouselungseg/_version.py"
version_scheme = "guess-next-dev"
local_scheme = "no-local-version"