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22/13/2023

  • Additional of JN.1 (B.1.1.529.2.86.1.1) tp tracked lineages (previously included in BA.2.86)
  • Removal of XBB.1.5 and XBB.1.16 (now reported under XBB)

10/11/2023

  • Addition of HK.3 (XBB.1.9.2.5.1.1.3) to tracked lineages. Previously included under EG.5
  • Addition of BA.2.86 (B.1.1.529.2.86) to tracked lineages
  • Adjustment to XBC, with XBC.1.3 not longer tracked seperately and a new XBC group to capture all XBC lineages added.

18/08/2023

  • Addition of EG.5 to tracked lineages
  • This lineage was previously reported as part of th parent "XBB" group

04/08/2023

  • Addiction of XBC.1.3 to tracked lineages
  • This lineage was previously included in the generic "Recombinant" category

05/05/2023

  • Major chane to list of tracked lineages.
    • BQ.1.1, XBF and XBC are no longer tracked separately
    • XBB is broken down to include XBB.1.5, XBB.1.16 and XBB (i.e. all others)
    • CH.1.1 is broken to include FK.1.1 and CH.1.1 (i.e all others)

Genomes are assigned to category on the basis of the deepest complete match to one of the following Pango lineages

Delta =       'B.1.617.2',
BA.1 =        'B.1.1.529.1'
BA.2 =        'B.1.1.529.2' 
BA.3 =        'B.1.1.529.3' 
BA.5 =        'B.1.1.529.4' 
BA.4 =        'B.1.1.529.5' 
BA.2.75 =     'B.1.1.529.2.75' 
CH.1.1 =      'B.1.1.529.2.75.3.4.1.1.1.1' 
FK.1.1 =      'B.1.1.529.2.75.3.4.1.1.1.1.17.1.1' 
XBB =         'XBB' 
XBB.1.16 =    'XBB.1.16' 
XBB.1.5 =     'XBB.1.5' 
Recombinant = 'X'

20/01/2023

  • Added CH.1.1 (including all descent lineages) to tracked lineages. Prior to this change this lineage was included in BA.2.75 (reflecting pangolin designation)

  • Added XBF (including all descent lineages) to tracked lineages. Prior to this change most XBF genomes were included in BA.2 (reflecting one of the ancestors of this recom

2/12/2022

25/11/2022

  • Added XBC (including all descendant lineages) to list of tracked variants

    • prior to change XBC genomes were not assigned to a VOC, so excluded from summary data

  • Retired BA.4.6 from the list of tracked variants

    • genomes identified as BA.4.6 previously will now be included in BA.4

11/11/2022

  • Added XBB (including all descendant lineages) to list of tracked variants
  • Prior to this change most XBB genomes were identified as BA.2 (reflecting pangolin designation)

03/11/2022

  • Added BQ.1.1 to list of tracked variants
  • Values for BA.5 now exclude this lineage and its descendants

07/10/2022

  • added data/all_variant_counts.csv file
  • community and border cases files will no longer be updated as these classes of case can no longer be reliably distinguised.

16/09/2022

  • added BA.4.6 to all datasaets
  • Values for BA.4 are all BA.4 excluding this specific lineage

22/7/2022

  • added BA.2.75 to both datasets.
  • retired BA.2.12.1, as this lineage is not longer a focus of ESR reporting.

15/7/2022

  • rolling meaning for VOC is now 'right-aligned' (i.e. is mean of the preceding 7 days), meaning most-recent dates are no longer NA-padded.
  • prettified the example plot a tiny bit