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environment.yaml
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environment.yaml
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name: single_cell
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bzip2=1.0.8=h93a5062_5
- ca-certificates=2024.2.2=hf0a4a13_0
- libexpat=2.6.2=hebf3989_0
- libffi=3.4.2=h3422bc3_5
- libsqlite=3.45.3=h091b4b1_0
- libzlib=1.2.13=h53f4e23_5
- ncurses=6.4.20240210=h078ce10_0
- openssl=3.2.1=h0d3ecfb_1
- pip=24.0=pyhd8ed1ab_0
- python=3.11.8=hdf0ec26_0_cpython
- readline=8.2=h92ec313_1
- setuptools=69.5.1=pyhd8ed1ab_0
- tk=8.6.13=h5083fa2_1
- wheel=0.43.0=pyhd8ed1ab_1
- xz=5.2.6=h57fd34a_0
- pip:
- anndata==0.10.7
- anndata2ri==1.3.1
- annoy==1.17.3
- anyio==4.3.0
- appnope==0.1.4
- argon2-cffi==23.1.0
- argon2-cffi-bindings==21.2.0
- array-api-compat==1.6
- arrow==1.3.0
- asttokens==2.4.1
- async-lru==2.0.4
- attrs==23.2.0
- babel==2.14.0
- beautifulsoup4==4.12.3
- bleach==6.1.0
- certifi==2024.2.2
- cffi==1.16.0
- charset-normalizer==3.3.2
- comm==0.2.2
- contourpy==1.2.1
- cycler==0.12.1
- cython==3.0.10
- debugpy==1.8.1
- decorator==5.1.1
- defusedxml==0.7.1
- executing==2.0.1
- fastjsonschema==2.19.1
- fonttools==4.51.0
- fqdn==1.5.1
- h11==0.14.0
- h5py==3.11.0
- httpcore==1.0.5
- httpx==0.27.0
- idna==3.7
- igraph==0.11.4
- imageio==2.34.1
- ipykernel==6.29.4
- ipython==8.23.0
- isoduration==20.11.0
- jedi==0.19.1
- jinja2==3.1.3
- joblib==1.4.0
- json5==0.9.25
- jsonpointer==2.4
- jsonschema==4.21.1
- jsonschema-specifications==2023.12.1
- jupyter-client==8.6.1
- jupyter-core==5.7.2
- jupyter-events==0.10.0
- jupyter-lsp==2.2.5
- jupyter-server==2.14.0
- jupyter-server-terminals==0.5.3
- jupyterlab==4.1.6
- jupyterlab-pygments==0.3.0
- jupyterlab-server==2.27.1
- kiwisolver==1.4.5
- lazy-loader==0.4
- legacy-api-wrap==1.4
- leidenalg==0.10.2
- llvmlite==0.42.0
- markupsafe==2.1.5
- matplotlib==3.8.4
- matplotlib-inline==0.1.7
- mistune==3.0.2
- natsort==8.4.0
- nbclient==0.10.0
- nbconvert==7.16.3
- nbformat==5.10.4
- nest-asyncio==1.6.0
- networkx==3.3
- notebook-shim==0.2.4
- numba==0.59.1
- numpy==1.26.4
- overrides==7.7.0
- packaging==24.0
- pandas==2.2.2
- pandocfilters==1.5.1
- parso==0.8.4
- patsy==0.5.6
- pexpect==4.9.0
- pillow==10.3.0
- platformdirs==4.2.1
- prometheus-client==0.20.0
- prompt-toolkit==3.0.43
- psutil==5.9.8
- ptyprocess==0.7.0
- pure-eval==0.2.2
- pycparser==2.22
- pygments==2.17.2
- pynndescent==0.5.12
- pyparsing==3.1.2
- python-dateutil==2.9.0.post0
- python-json-logger==2.0.7
- pytz==2024.1
- pyyaml==6.0.1
- pyzmq==26.0.2
- referencing==0.35.0
- requests==2.31.0
- rfc3339-validator==0.1.4
- rfc3986-validator==0.1.1
- rpds-py==0.18.0
- rpy2==3.5.16
- scanpy==1.10.1
- scikit-image==0.23.2
- scikit-learn==1.4.2
- scipy==1.13.0
- scrublet==0.2.3
- seaborn==0.13.2
- send2trash==1.8.3
- session-info==1.0.0
- six==1.16.0
- sniffio==1.3.1
- soupsieve==2.5
- stack-data==0.6.3
- statsmodels==0.14.2
- stdlib-list==0.10.0
- terminado==0.18.1
- texttable==1.7.0
- threadpoolctl==3.4.0
- tifffile==2024.4.18
- tinycss2==1.3.0
- tornado==6.4
- tqdm==4.66.2
- traitlets==5.14.3
- types-python-dateutil==2.9.0.20240316
- typing-extensions==4.11.0
- tzdata==2024.1
- tzlocal==5.2
- umap-learn==0.5.6
- uri-template==1.3.0
- urllib3==2.2.1
- wcwidth==0.2.13
- webcolors==1.13
- webencodings==0.5.1
- websocket-client==1.8.0
prefix: /Users/ekaterinashitik/miniforge3/envs/single_cell