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<h1 class="title toc-ignore"><strong>Course Syllabus and Materials</strong></h1>
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<p class="caption">Y’all ready for this?</p>
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<h1 id="ready-set-go">Ready, Set, Go!</h1>
<p><strong>Anything out of place?</strong> Please let us know if anything is missing, broken (e.g., broken links), or if there is anything else that would be helpful to include. Feel free to submit any comments to our <a href="https://emilymarkowitz-noaa.github.io/FishR101/feedback.html">feedback page</a>.</p>
<p><strong>This class should be a collaborative learning space.</strong> Have any helpful links or snipits of code along the way you think would be helpful to to your fellow classmates? Share your <a href="https://emilymarkowitz-noaa.github.io/FishR101/share-help.html">nifty-est tips and tricks here!</a></p>
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<p><em>This page was last updated Wednesday February 24 2021 12:12:02 PM PST</em></p>
<p><em>All times are in Pacific Time. Please click on the title to see the session description. </em></p>
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<div id="tuesday-january-19-2021" class="section level2">
<h2>Tuesday, January 19, 2021</h2>
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<div class="left-date">9:00 AM-9:10 AM</div>
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<b>Introductions</b>
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<div class="right-authors">Host:
Caitlin Allen Akselrud & Emily Markowitz</div>
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<li>
<p>Welcome!</p>
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</ul>
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<div class="left-date">9:10 AM-9:50 AM</div>
<div class="center-title">
<b>Introduce New Materials - Basic mathematics in R
</b>
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<div class="right-authors">Host: Caitlin Allen Akselrud</div>
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<li>
<p>Agenda</p>
<strong>
<em>Start by doing what is necessary; then do what is possible; and suddenly you are doing the impossible.</em>
</strong>
<p> ~ Francis of Assisi</p>
<p></p>
<a href="https://docs.google.com/presentation/d/1XFU8nEpnvoJKES4SxO88L3ddqAtZtQTeEauLzQlFfXk/edit?usp=sharing">Lesson</a>
<p></p>
<a href="https://drive.google.com/file/d/1uZkvtsLROntRssNVBC5mptKdd1XloOls/view?usp=sharing">Recording of lesson</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-WelcomeR">Repository</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-WelcomeR/archive/main.zip">Download Repository</a>
<p>Open R Studio and check it out: </p>
<p>1. R project</p>
<p>2. Keyboard shortcuts (Tools > Keyboard shortcuts)</p>
<p>3. Workflow (good file structure)- example</p>
<p>4. Basic math</p>
<p>5. Vectors, Matrices, Arrays, Lists, and Data Frames</p>
<p>6. Best Practices Review
</p>
</li>
</ul>
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<ul class="workshops">
<li>
<img src="images/RTheHero.png"/>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">10:00 AM-10:40 AM</div>
<div class="center-title">
<b>Interactive Learning</b>
</div>
<div class="right-authors">Host: Caitlin Allen Akselrud</div>
</div>
<ul class="workshops">
<li>
<p>Resources</p>
<p>From the presentation:</p>
<p></p>
<a href="https://ourcodingclub.github.io/tutorials.html">1. Our Coding Club</a>
<p></p>
<a href="Good enough practices in scientific computing">2. Wilson et al., 2017</a>
<p></p>
<a href="https://www.guru99.com/r-functions-programming.html">3. Math functions in R (resource)</a>
<p></p>
<a href="https://www.programcreek.com/2014/01/vector-array-list-and-data-frame-in-r/">4. Data Types in R</a>
<p>Other great resources: </p>
<p></p>
<a href="https://r4ds.had.co.nz/index.html">1. [Textbook] Intro to R for Data Science (Hadley Wickham)</a>
<p></p>
<a href="https://adv-r.hadley.nz/">2. [Textbook] Advanced R (Hadley Wickham)</a>
<p></p>
<a href="https://rstudio.com/resources/cheatsheets/">3. R Cheatsheets</a>
<p></p>
<a href="what they forgot to teach you about R">4. Jenny Bryan</a>
<p></p>
<a href="https://swirlstats.com/students.html ">5. Interactive Learning in R</a>
<p>6. Eric Dunford’s Intro to R course & slides: http://ericdunford.com/ppol670/ </p>
<p></p>
<a href="https://ourcodingclub.github.io/tutorials.html ">7. Our Coding Club</a>
<p></p>
<a href="https://swirlstats.com/students.html">8. Swirl R Package</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">10:50 AM-11:00 AM</div>
<div class="center-title">
<b>Break</b>
</div>
<div class="right-authors"></div>
</div>
<ul class="workshops"></ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">11:00 AM-12:00 AM</div>
<div class="center-title">
<b>Office Hours - Homework Assignment</b>
</div>
<div class="right-authors">Host:
Caitlin Allen Akselrud & Emily Markowitz</div>
</div>
<ul class="workshops">
<li>
<p>An informal opprotunity to come by to ask any questions you have about the course, content, or with specific questions about issues you have with the homework or in your own analyses.</p>
<p>Today's Homework</p>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-WelcomeR/blob/main/code/9_homework1.R">1. Practice the skills we just learned in R! Download and refer to 9_homework1.R</a>
<p></p>
<a href="https://emilymarkowitz-noaa.github.io/FishR101/share-help.html">2. Add to Share Insights with one thing you learned!</a>
</li>
</ul>
</div>
</div>
<p><br></p>
</div>
<div id="thursday-january-21-2021" class="section level2">
<h2>Thursday, January 21, 2021</h2>
<div class="schedule">
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:00 AM-9:10 AM</div>
<div class="center-title">
<b>Review Homework</b>
</div>
<div class="right-authors"></div>
</div>
<ul class="workshops">
<li>
<p>Welcome! </p>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-WelcomeR/blob/main/code/10_homework1_solutions.R ">Answers to the homework</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:10 AM-9:50 AM</div>
<div class="center-title">
<b>Introduce New Materials - Base R language and {Tidyverse} language</b>
</div>
<div class="right-authors">Host: Caitlin Allen Akselrud</div>
</div>
<ul class="workshops">
<li>
<p>Agenda</p>
<em>You can not use #tidyverse without base R. It is not a dichotomy. Pick the tools that make you most effective.</em>
<p> ~ The Great Hadley Wickham, creater of Tidyverse</p>
<p></p>
<a href="https://drive.google.com/file/d/14qscFfcWZrWQjC6g2L0AQeq79CSEiq0h/view?usp=sharing ">Recording of Lesson</a>
<p></p>
<a href="https://docs.google.com/presentation/d/1C855dzCUu25-45f4rLHJc56hkBTS309JC_cNRa_lItM/edit?usp=sharing ">Lesson</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-BaseRvTidy">Repository Webpage</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-BaseRvTidy/archive/main.zip ">Download Repository Content</a>
<p></p>
<a href="https://docs.google.com/document/d/17vqfBYUxyasruIdkjhp2YA3Afcr1BXvcSoQ5lvl3Wcs/edit?usp=sharing">0. Review of how to create R Projects and download content from GitHub</a>
<p>1. The importance of checking as you go. </p>
<p>2. Loading libraries (e.g., tidyverse: install.packages() and library())</p>
<p>3. Best practices - ‘renv’ for managing packages</p>
<p>*Note that after this lessson we will be focusing on Tidy methods.</p>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:50 AM-10:00 AM</div>
<div class="center-title">
<b>Break</b>
</div>
<div class="right-authors"></div>
</div>
<ul class="workshops">
<li>
<img src="images/Gooood.jpg"/>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">10:00 AM-10:40 AM</div>
<div class="center-title">
<b>Interactive Learning</b>
</div>
<div class="right-authors">Host: Caitlin Allen Akselrud</div>
</div>
<ul class="workshops">
<li>
<p>Resources</p>
<p></p>
<a href="https://www.r-project.org/about.html">1. R Project</a>
<p>
2. The Comprehensive R Archive Network: CRAN and all the packages</p>
<p></p>
<a href="https://www.tidyverse.org/ ">
3. Tidyverse</a>
<p></p>
<a href="https://garthtarr.github.io/meatR/janitor.html#clean_names() ">
4. janitor package (e.g., clean_names())
Guide</a>
<p>
5. renv package</p>
<p></p>
<a href="https://rstudio.github.io/renv/articles/renv.html ">Guide</a>
<p></p>
<a href="https://rstudio.com/resources/rstudioconf-2020/renv-project-environments-for-r/">RStudio::Conf(2020) Talk by Creator</a>
<p></p>
<a href="https://kevinushey-2020-rstudio-conf.netlify.app/slides.html#1">Slides from RStudio::Conf(2020) Talk by Creator</a>
<p></p>
<a href="R Cheatsheets">
6. EXTRA</a>
<p></p>
<p></p>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">10:50 AM-11:00 AM</div>
<div class="center-title">
<b>Break</b>
</div>
<div class="right-authors"></div>
</div>
<ul class="workshops">
<li>
<p>Inspiration Time!</p>
<p></p>
<a href="https://www.youtube.com/watch?v=xfBWk4nw440">
You Should Learn to Program - Christian Genco at TEDxSMU</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">11:00 AM-12:00 AM</div>
<div class="center-title">
<b>Office Hours - Homework Assignment</b>
</div>
<div class="right-authors">Host: Caitlin Allen Akselrud & Emily Markowitz</div>
</div>
<ul class="workshops">
<li>
<p>An informal opprotunity to come by to ask any questions you have about the course, content, or with specific questions about issues you have with the homework or in your own analyses.</p>
<p>Today's Homework</p>
<p>1. Practice the skills we just learned in R! Download 3_homework.R</p>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-BaseRvTidy/blob/main/code/3_homework.R">R Script of questions</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-BaseRvTidy/blob/main/code/3_Homework.pdf">
Pretty PDF of questions (made in R Markdown)</a>
<p>
2. Add to Share Insights with one thing you learned! </p>
<p></p>
<a href="https://emilymarkowitz-noaa.github.io/FishR101/share-help.html">Add to the google docs how you will be able to use what you learned today to improve how you work with data</a>
<p></p>
<a href="https://rstudio.com/conference/">
3. Check out the rstudio global(2021)</a>
<p></p>
<a href="https://global.rstudio.com/student/page/40521?course_session_id=2792">Check out any of the talks, but the first keynote talk by Hadley Wickham might be a good one!</a>
</li>
</ul>
</div>
</div>
<p><br></p>
</div>
<div id="tuesday-february-2-2021" class="section level2">
<h2>Tuesday, February 2, 2021</h2>
<div class="schedule">
<div class="limit">
<div class="workshops-button">
<div class="left-date">8:30 AM-8:55 AM</div>
<div class="center-title">
<b>Download Classwork Help</b>
</div>
<div class="right-authors">Host: Emily Markowitz</div>
</div>
<ul class="workshops">
<li>
<p>I'll help you go through the steps in this guide and get you set up class!</p>
<p></p>
<p></p>
<a href="https://calendar.google.com/event?action=TEMPLATE&tmeid=MW5hbjg5Y25wbzUxcWMwZWRxaGc0MWZvYmpfMjAyMTAyMDJUMTYzMDAwWiBlbWlseS5tYXJrb3dpdHpAbm9hYS5nb3Y&tmsrc=emily.markowitz%40noaa.gov ">Join me by adding this google calendar event to your calendar.</a>
<p></p>
<a href="https://docs.google.com/document/d/17vqfBYUxyasruIdkjhp2YA3Afcr1BXvcSoQ5lvl3Wcs/edit?usp=sharing ">
Review of how to create R Projects and download content from GitHub</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:00 AM-9:10 AM</div>
<div class="center-title">
<b>Review Homework</b>
</div>
<div class="right-authors">Host: Emily Markowitz</div>
</div>
<ul class="workshops">
<li>
<p>Welcome! </p>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-BaseRvTidy/blob/main/code/3_Homework-Answers.pdf ">Homework answers</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:10 AM-9:50 AM</div>
<div class="center-title">
<b>Introduce New Materials - Dive into Tidy: data wrangling and manipulation Part I</b>
</div>
<div class="right-authors">Host: Caitlin Allen Akselrud</div>
</div>
<ul class="workshops">
<li>
<p>Agenda</p>
<strong>
<em>Achievement is talent plus preparation.</em>
</strong>
<p> ~ Malcolm Gladwell, Outliers: The Story of Success</p>
<p></p>
<a href="https://drive.google.com/file/d/1hnVYKcafMvwSHYq2NdyQNmWopj5Vo1pH/view?usp=sharing">Recording of Lesson</a>
<p></p>
<a href="https://docs.google.com/presentation/d/1C9AGuHVk9tR5wI0h96bJ3bnK19uGxjZ0aSVY-tP_CbE/edit?usp=sharing ">Lesson</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt1 ">Repository Webpage</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt1/archive/main.zip">Download Repository Content</a>
<p>1. Workflow</p>
<p>2. snake_case</p>
<p>3. Reading in data, read-in problems and solutions </p>
<p>4. Writing data (e.g., to .csv) </p>
<p>5. Best Practices</p>
<p>
</p>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:50 AM-10:00 AM</div>
<div class="center-title">
<b>Break</b>
</div>
<div class="right-authors"></div>
</div>
<ul class="workshops">
<li>
<img src="images/RVsExcel.jpg"/>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">10:00 AM-10:40 AM</div>
<div class="center-title">
<b>Interactive Learning</b>
</div>
<div class="right-authors">Host: Caitlin Allen Akselrud</div>
</div>
<ul class="workshops">
<li>
<p>Resources</p>
<p></p>
<a href="https://www.rstudio.com/resources/cheatsheets/">RStudio Cheat Sheets</a>
<p></p>
<a href="https://www.tidyverse.org/">And the tidyverse website (includes free online textbook)</a>
<p></p>
<a href="https://support.rstudio.com/hc/en-us/articles/218611977-Importing-Data-with-RStudio">Common file types - RStudio import tutorial</a>
<p></p>
<a href="https://www.datacamp.com/community/tutorials/r-data-import-tutorial">More file types - DataCamp import tutorial</a>
<p>Excel - Here’s some helpful options: http://www.sthda.com/english/wiki/reading-data-from-excel-files-xls-xlsx-into-r</p>
<p></p>
<a href="https://www.rdocumentation.org/packages/utils/versions/3.6.2/topics/memory.size ">Memory issues</a>
<p></p>
<a href="https://evoldyn.gitlab.io/evomics-2018/ref-sheets/R_data-import.pdf">Import Data Cheatsheet</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">10:50 AM-11:00 AM</div>
<div class="center-title">
<b>Break</b>
</div>
<div class="right-authors"></div>
</div>
<ul class="workshops">
<li>
<p>Inspiration Time!</p>
<p></p>
<a href="https://medium.com/data-professor/101-data-science-quotes-afad20d1e6ee">101 Data Science Quotes</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">11:00 AM-12:00 AM</div>
<div class="center-title">
<b>Office Hours - Homework Assignment</b>
</div>
<div class="right-authors">Host: Caitlin Allen Akselrud & Emily Markowitz</div>
</div>
<ul class="workshops">
<li>
<p>An informal opprotunity to come by to ask any questions you have about the course, content, or with specific questions about issues you have with the homework or in your own analyses.</p>
<p>Today's Homework</p>
<p>1. Practice the skills we just learned in R! </p>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt1/blob/main/code/4_homework3.R ">R Script of questions</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt1/blob/main/code/4_homework3.pdf">Pretty PDF of questions (made in R Markdown)</a>
<p>
2. Add to Share Insights with one thing you learned! </p>
<p></p>
<a href="https://emilymarkowitz-noaa.github.io/FishR101/share-help.html ">Add to the google docs how you will be able to use what you learned today to improve how you work with data</a>
</li>
</ul>
</div>
</div>
<p><br></p>
</div>
<div id="thursday-february-4-2021" class="section level2">
<h2>Thursday, February 4, 2021</h2>
<div class="schedule">
<div class="limit">
<div class="workshops-button">
<div class="left-date">8:30 AM-8:55 AM</div>
<div class="center-title">
<b>Download Classwork Help</b>
</div>
<div class="right-authors">Host: Emily Markowitz</div>
</div>
<ul class="workshops">
<li>
<p>I'll help you go through the steps in this guide and get you set up class!</p>
<p></p>
<p></p>
<a href="https://calendar.google.com/event?action=TEMPLATE&tmeid=MDlhNGZubnY1NmswaW0zZzhrc3VsOWk5ODdfMjAyMTAyMDRUMTYzMDAwWiBlbWlseS5tYXJrb3dpdHpAbm9hYS5nb3Y&tmsrc=emily.markowitz%40noaa.gov">Join me by adding this google calendar event to your calendar.</a>
<p></p>
<a href="https://docs.google.com/document/d/17vqfBYUxyasruIdkjhp2YA3Afcr1BXvcSoQ5lvl3Wcs/edit?usp=sharing ">
Review of how to create R Projects and download content from GitHub (+ new updates!)</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:00 AM-9:10 AM</div>
<div class="center-title">
<b>Review Homework</b>
</div>
<div class="right-authors">Host: Emily Markowitz</div>
</div>
<ul class="workshops">
<li>
<p>Welcome! </p>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt1/blob/main/code/4_homework3_solutions.R">Homework answers (.R)</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt1/blob/main/code/4_homework3_solutions.pdf">Homework answers (.pdf)</a>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:10 AM-9:50 AM</div>
<div class="center-title">
<b>Introduce New Materials - Dive into Tidy: data wrangling and manipulation Part II</b>
</div>
<div class="right-authors"></div>
</div>
<ul class="workshops">
<li>
<p>Agenda</p>
<strong>
<em>Everybody should learn to program a computer, because it teaches you how to think.</em>
</strong>
<p> ~ Steve Jobs </p>
<p></p>
<a href="https://drive.google.com/file/d/1rpheCQjtZCIu2SHGoqnNW_hBBKppdGBX/view?usp=sharing">Recording of Lesson</a>
<p></p>
<a href="https://docs.google.com/presentation/d/1bTfBpQ-_Or5C3wOzs0oEqvoQWXecE9lRLcjHS6hN5J4/edit?usp=sharing">Lesson</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt2">Repository Webpage</a>
<p></p>
<a href="https://github.com/EmilyMarkowitz-NOAA/FishR101-TidyPt2/archive/main.zip">Download Repository Content</a>
<p>1. More wrangling data!</p>
<p>2. Best Practices
</p>
</li>
</ul>
</div>
<div class="limit">
<div class="workshops-button">
<div class="left-date">9:50 AM-10:00 AM</div>
<div class="center-title">