README.Rmd

---
title: "RNAseqFunctions"
output: github_document
---

Build: <a href="https://travis-ci.org/EngeLab/sRNAseqFunctions"><img src="https://travis-ci.org/EngeLab/RNAseqFunctions.svg?branch=master"></a>

Test coverage: [![codecov](https://codecov.io/gh/EngeLab/RNAseqFunctions/branch/master/graph/badge.svg)](https://codecov.io/gh/EngeLab/RNAseqFunctions)

### Description

A package of RNAseq QC and analysis tools for the Enge lab. 

### Installation

```{r, eval = FALSE}
if(!"devtools" %in% rownames(installed.packages())) {
	install.packages("devtools")
}

devtools::install_github("EngeLab/RNAseqFunctions")
```

### Vignettes

The vignette for loading and filtering counts data can be viewed in R with the 
following command:

```{r, eval = FALSE}
vignette("loadAndFilterFuns", package = "RNAseqFunctions")
```

The vignette for running t-SNE and plotting can be viewed in R with the 
following command:

```{r, eval = FALSE}
vignette("tsneAndPlotting", package = "RNAseqFunctions")
```