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GAZ to INSDC country list mapping #15

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ddooley opened this issue Apr 7, 2019 · 0 comments
Open

GAZ to INSDC country list mapping #15

ddooley opened this issue Apr 7, 2019 · 0 comments
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mapping Any request regarding mapping GAZ to other sources (geonames, etc)

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@ddooley
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ddooley commented Apr 7, 2019

In an effort to comply with INSDC reporting of sample location by country, we have created a mapping of GAZ country & region codes to their INSDC counterparts at http://www.insdc.org/country.html by using a hasDbXref:INSDC:country:[xyz] annotation on the appropriate GAZ item. Is the GAZ team interested in adding these annotations directly to GAZ? If so we have the .owl import file containing the annotations we can provide that could be easily merged.

The include file is at https://github.com/GenEpiO/genepio/blob/master/imports/gaz_insdc_mapping.owl
see
http://www.insdc.org/country.html
It is based on https://unstats.un.org/unsd/methodology/m49/ , but sadly, in either case, there are no region / country-specific purls to offer.

@cmungall cmungall added the mapping Any request regarding mapping GAZ to other sources (geonames, etc) label Apr 29, 2019
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Labels
mapping Any request regarding mapping GAZ to other sources (geonames, etc)
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