Dockerfile

FROM ubuntu:latest

ENV GFDL_WORK /tmp
ENV GFDL_BASE /isca
ENV GFDL_DATA /data
ENV GFDL_ENV docker

# # ignore missing hardware needed lfor openMPI speedup
# ENV ["OMPI_MCA_btl", "^openib"]
# # avoid mpi vader error [d3f8787e619d:05992] Read -1, expected 8192, errno = 1
# # https://github.com/open-mpi/ompi/issues/4948
# ENV  ["OMPI_MCA_btl_vader_single_copy_mechanism", "none"]

RUN apt-get update && apt-get upgrade -y
RUN DEBIAN_FRONTEND=noninteractive \
	apt-get install -y \
	build-essential \
	curl \
	gfortran \
	git \
    libnetcdf-dev \
    libpnetcdf-dev \
    libnetcdff-dev \
    libhdf5-openmpi-dev \
    python3 \
    python3-pip \
    tcl \
    tcl-dev


# support for running as a local user so file permissions are correct
RUN curl -o /usr/local/bin/gosu -SL "https://github.com/tianon/gosu/releases/download/1.10/gosu-$(dpkg --print-architecture)" \
    && chmod +x /usr/local/bin/gosu

RUN groupadd -g 9004 isca_build
RUN useradd -ms /bin/bash -u 9002 -g isca_build isca
COPY . /isca
RUN chown -R isca /isca

RUN pip3 install -r /isca/src/extra/python/requirements.txt
RUN pip3 install -e /isca/src/extra/python

RUN mkdir -p /data && chown -R isca /data
VOLUME /data
VOLUME /isca

WORKDIR /isca

COPY docker-entrypoint.sh /usr/local/bin/entrypoint.sh
RUN chmod +x /usr/local/bin/entrypoint.sh
ENTRYPOINT ["/usr/local/bin/entrypoint.sh"]

#RUN python3 -c "import isca; cb = isca.IscaCodeBase.from_directory('/isca'); cb.compile()"
#CMD python3 /isca/exp/held_suarez.py --compile --up-to -i 3 -n 2