README.md

Citing KinFin

Laetsch DR and Blaxter ML, 2017. KinFin: Software for Taxon-Aware Analysis of Clustered Protein Sequences. G3: Genes, Genomes, Genetics. Doi:10.1534/g3.117.300233

Dependencies

• UNIX system

Installation

• Create Conda environment

$ conda create -n kinfin -c conda-forge docopt==0.6.2 scipy==0.19.0 matplotlib networkx==1.11 ete3
$ conda activate kinfin

• Clone github repo

$ git clone https://github.com/DRL/kinfin.git

• Run install script for fetching databases

$ cd kinfin
$ ./install

• Test kinfin

$ ./test

Usage

$ ./kinfin -h

Documentation

kinfin.readme.io