From 31082c676ac68df61972afe780a533d05aefe635 Mon Sep 17 00:00:00 2001 From: Colin Date: Wed, 6 Dec 2023 11:57:44 -0500 Subject: [PATCH] Add source code links for demos --- README.md | 22 +++++++++++++++++----- 1 file changed, 17 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 87cf148..42b888d 100644 --- a/README.md +++ b/README.md @@ -63,31 +63,43 @@ In order to get started with JBrowseR, please refer to the vignette that best su Allows you to search by gene name -https://gmod.shinyapps.io/basic_usage_with_text_index +- Link demo: https://gmod.shinyapps.io/basic_usage_with_text_index +- Source code: https://github.com/GMOD/JBrowseR/blob/main/example_apps/basic_usage_with_text_index/app.R ### Multi purpose demo app Shows a "bookmark" type feature, loading data from data frame, and buttons to navigate to genes of interest -https://gmod.shinyapps.io/bookmarks_demo +- Live link: https://gmod.shinyapps.io/bookmarks_demo +- Source code: https://github.com/GMOD/JBrowseR/blob/main/example_apps/bookmarks_demo/app.R ### Load config.json file Shows loading a config.json file -https://gmod.shinyapps.io/load_config_json +- Live link: https://gmod.shinyapps.io/load_config_json +- Source code: https://github.com/GMOD/JBrowseR/blob/main/example_apps/load_config_json/app.R ### Load data frame Simple example showing a data frame as a track -https://gmod.shinyapps.io/load_data_frame +- Live link: https://gmod.shinyapps.io/load_data_frame +- Source code: https://github.com/GMOD/JBrowseR/blob/main/example_apps/load_data_frame/app.R ### Gene fusion example Shows putative gene fusions in the SKBR3 breast cancer cell line -https://gmod.shinyapps.io/skbr3_gene_fusions +- Live link: https://gmod.shinyapps.io/skbr3_gene_fusions +- Source code: https://github.com/GMOD/JBrowseR/blob/main/example_apps/skbr3_gene_fusions/app.R + +### Using plugins + +Uses the config.json loading method + +- Live link: not yet online +- Source code: https://github.com/GMOD/JBrowseR/blob/main/example_apps/using_plugins/app.R ## Citation