From e97ff55cf2c57c2108a36059a3a1dd0aedde4200 Mon Sep 17 00:00:00 2001 From: Robert Buels Date: Wed, 14 Feb 2018 08:56:23 -0800 Subject: [PATCH] updated release notes some more thanks to @cmdcolin for pointing out some stuff I missed! --- release-notes.txt | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/release-notes.txt b/release-notes.txt index bbc10ba74e..263993728a 100644 --- a/release-notes.txt +++ b/release-notes.txt @@ -6,6 +6,15 @@ unusable on Perl 5.18 and higher. Huge thanks to Colin Diesh for tracking this down. (issue #470, pull #912, @cmdcolin) + * Added code to calculate feature density histograms for Tabix-indexed GFF3 + (`GFF3Tabix`) data sources. Thanks to @nathandunn for noticing and fixing + this! (pull #956, @nathandunn) + + * Added a new "Hide unspliced reads" menu item to Alignments and Alignments2 + tracks that filter out reads that have no `N`s in their CIGAR strings. + Thanks to Deepak Kunni and Nathan Dunn for their work on this. + (pull #921, @deepakunni3) + * setup.sh now uses npm instead of Bower (which is deprecated) to install dependencies. @enuggetry @@ -38,6 +47,17 @@ a `key` in its track metadata, and use that if it is present. Thanks to Loraine Guéguen for the idea (issue #957, pull #958). @rbuels + * Fixed bug in `maker2jbrowse` script that allows `maker2jbrowse` to be installed + in system executable directories, and adds a `--sortMem` option. + (pull #877, @cmdcolin) + + * Fixed a cosmetic/styling bug with malformed DOM structure in feature detail popup + dialogs. Thanks to Erik Rasche for noticing and fixing this! (pull #882, @erasche) + + * Added a configuration option that can disable JBrowse's behavior of updating the + browser's title text as the view changes. Thanks to Luka Jeran, Primož Hadalin, + and Nathan Dunn for this! (pull #904, @lukaw3d) + * Suppress execution of biodb-to-json.pl on sample data while running setup.sh on MacOS High Sierra with stock Perl due to an issue with the stock Perl having broken BerkeleyDB integration, which is needed by Bio::DB::SeqFeature::Store,