diff --git a/README.md b/README.md index b18f298..0862407 100644 --- a/README.md +++ b/README.md @@ -104,15 +104,6 @@ The human GRCh38 [reference transcriptome](https://ftp.ensembl.org/pub/release-1 --gtf dataset/genes.gtf ``` -##### USING SPARSIM PRESET MATRICES (e.g Chu et al. 10X Genomics datasets) - -```bash -nextflow run main.nf --matrix Chu_param_preset \ - --transcriptome datasets/Homo_sapiens.GRCh38.cdna.all.fa \ - --features gene_name \ - --gtf datasets/Homo_sapiens.GRCh38.112.gtf -``` - ##### WITH PCR AMPLIFICTION ```bash @@ -136,6 +127,15 @@ nextflow run main.nf --matrix Chu_param_preset \ --cell_types_annotation dataset/sub_pbmc_cell_type.csv ``` +##### USING A SPARSIM PRESET MATRIX (e.g Chu et al. 10X Genomics datasets) + +```bash +nextflow run main.nf --matrix Chu_param_preset \ + --transcriptome datasets/Homo_sapiens.GRCh38.cdna.all.fa \ + --features gene_name \ + --gtf datasets/Homo_sapiens.GRCh38.112.gtf +``` + ##### WITH PERSONALIZED ERROR MODEL ```bash