Skip to content

Latest commit

 

History

History
216 lines (211 loc) · 29.1 KB

File metadata and controls

216 lines (211 loc) · 29.1 KB

Back to indexFeedback

Growth Ranking > Software > R

Updated: 2024-09-29   /   Tips:English projects refer to those with documents in English, usually displayed in the readme / wiki / official website.

# Repository Description Stars Average daily growth Updated
1 cxli233/FriendsDontLetFriends Friends don't let friends make certain types of data visualization - What are they and why are they bad. 6318 7 2024-07-11
2 nikitoshina/staticryptR - 31 3 2024-09-19
3 hypertidy/isoraster Create Contour Lines and Contour Polygons from a Raster 5 2 2024-09-26
4 Rdatatable/data.table R's data.table package extends data.frame: 3585 1 2024-09-28
5 allisonhorst/palmerpenguins A great intro dataset for data exploration & visualization (alternative to iris). 878 1 2024-09-19
6 rstudio/rmarkdown Dynamic Documents for R 2865 1 2024-09-13
7 thomasp85/patchwork The Composer of ggplots 2461 1 2024-09-16
8 rstudio/gt Easily generate information-rich, publication-quality tables from R 2012 1 2024-09-28
9 toddwschneider/nyc-taxi-data Import public NYC taxi and for-hire vehicle (Uber, Lyft) trip data into a PostgreSQL or ClickHouse database 1991 1 2024-04-01
10 rstudio/reticulate R Interface to Python 1671 1 2024-09-23
11 hadley/elmer Call LLM APIs from R 44 1 2024-09-27
12 rstudio/blogdown Create Blogs and Websites with R Markdown 1728 1 2024-09-16
13 epistorm/rt-collabathon-2024 Repository for the 2024 Collabathon 5 1 2024-09-24
14 ddsjoberg/gtsummary Presentation-Ready Data Summary and Analytic Result Tables 1041 1 2024-09-27
15 MichelNivard/gptstudio GPT RStudio addins that enable GPT assisted coding, writing & analysis 893 1 2024-09-13
16 stephenturner/biorecap Retrieve and summarize bioRxiv preprints with a local LLM using ollama 52 1 2024-09-27
17 flrsh-dev/cran-checks A public API to get CRAN package check status. Updated once daily. #rstats 16 1 2024-09-28
18 mjskay/ggdist Visualizations of distributions and uncertainty 844 1 2024-07-27
19 AllanCameron/geomtextpath Create curved text paths in ggplot2 624 1 2024-06-14
20 YuLab-SMU/ggtangle Draw Network with Data 6 1 2024-09-18
21 GuoBioinfoLab/TCellSI The First Innovative Tool to Comprehensively Assess T Cell States 111 1 2024-09-27
22 rstudio/shiny Easy interactive web applications with R 5354 1 2024-09-27
23 yihui/litedown A lightweight version of R Markdown 160 1 2024-09-19
24 satijalab/seurat R toolkit for single cell genomics 2258 1 2024-09-19
25 Pecners/rayshader_portraits - 519 1 2024-08-21
26 easystats/easystats 🌌 The R easystats-project 1083 1 2024-09-12
27 CelVoxes/ceLLama Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports 141 1 2024-09-13
28 AlbertRapp/tidychatmodels Chat With All Kinds of AI Models Through a Common Interface 110 1 2024-04-24
29 andrelau0622/kaRma kaRma is an R package for causal inference analysis that supports multiple methods. 10 1 2024-09-22
30 andreweatherman/gtUtils Enhancements and Utilities for the gt Package 14 1 2024-09-15
31 tidyverse/dplyr dplyr: A grammar of data manipulation 4752 1 2024-08-27
32 dreamRs/esquisse RStudio add-in to make plots interactively with ggplot2 1775 1 2024-09-18
33 IndrajeetPatil/ggstatsplot Enhancing {ggplot2} plots with statistical analysis 📊📣 1988 1 2024-09-03
34 RamiKrispin/ts-cluster-analysis-r Materials for the the Analyzing Time Series at Scale with Cluster Analysis in R Workshop 10 1 2024-09-21
35 moodymudskipper/ask ask R anything 47 1 2024-09-27
36 tidyverse/tidyverse Easily install and load packages from the tidyverse 1654 1 2024-06-21
37 hughjonesd/ggmagnify Create a magnified inset of part of a ggplot object 272 1 2024-06-24
38 yihui/knitr A general-purpose tool for dynamic report generation in R 2380 1 2024-09-20
39 pola-rs/r-polars Polars R binding 468 1 2024-09-27
40 kennedymwavu/mwavu Personal Website 14 1 2024-09-08
41 vincentarelbundock/tinytable Simple and Customizable Tables in R 196 1 2024-09-24
42 jcheng5/shinychat Chat UI component for Shiny for R 14 1 2024-09-24
43 crossmodaldebate/NCA-SEM NCA-SEM module for Jamovi. Necessary Condition Analysis via Structural Equation Modeling (NCA-SEM) is a data analysis method that is used to identify the necessary conditions for a desired outcome 11 1 2024-09-17
44 plotly/plotly.R An interactive graphing library for R 2545 1 2024-09-20
45 tidyverse/ggplot2 An implementation of the Grammar of Graphics in R 6480 1 2024-09-23
46 jinworks/CellChat R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics 260 1 2024-09-17
47 whipson/maestro Simple, lightweight orchestrator for R pipelines 102 1 2024-09-23
48 leedrake5/Russia-Ukraine Equipment Loss Tracking 628 1 2024-09-27
49 mitchelloharawild/vitae R Markdown Résumés and CVs 1222 1 2024-07-10
50 tylermorganwall/rayshader R Package for 2D and 3D mapping and data visualization 2051 1 2024-07-27
51 matt-dray/pixeltrix 👾🖱️ R package: make pixel art interactively in a plot window, get a matrix, make a gif 21 0 2024-06-04
52 Cidree/forestdata - 12 0 2024-09-20
53 cran/sensitivity ❗ This is a read-only mirror of the CRAN R package repository. sensitivity — Global Sensitivity Analysis of Model Outputs and Importance Measures 16 0 2024-08-29
54 rladies/meetup-presentations_rome Meetup presentations and material from R-Ladies Rome 8 0 2024-09-20
55 PavlidisLab/ermineR R wrapper for ermineJ 6 0 2024-09-19
56 filipezabala/jurimetrics General Purpose Tools for Jurimetrics. 17 0 2024-08-23
57 nanxstats/OHPL 📈 Ordered Homogeneity Pursuit Lasso for Group Variable Selection 7 0 2024-07-21
58 stat4reg/DNNcausal An R-package to estimate average causal effects with AIPW using Deep Neural Networks, in particular Convolutional NN. 7 0 2024-09-20
59 levenc/posologyr Model-Informed Precision Dosing (MIPD) with R 12 0 2024-09-13
60 nielshintzen/vmstools Automatically exported from code.google.com/p/vmstools 18 0 2024-05-30
61 whatdoidohaha/RFA Reference-free analysis of genetic architecture 7 0 2024-09-21
62 MagpiePKU/EpiTrace Cell age determination by scATAC-seq and bulk-ATAC-seq 24 0 2024-08-28
63 rdmorin/mutation_rainstorm Compute points for a cohort-wide variation on rainfall plots ("rainstorms") and identify mutation peaks 10 0 2024-07-18
64 SydneyBioX/MoleculeExperiment - 12 0 2024-05-29
65 JaseZiv/bettRtab An R client to interact with the API of Australian betting company TAB 7 0 2024-07-31
66 russellpierce/naptime Robust flexible Sys.sleep replacement 9 0 2024-08-06
67 ashokkrish/spatialEpisim spatialEpisim: Spatial Tracking of Infectious Disease Epidemics using Mathematical Models 9 0 2024-09-06
68 valentinitnelav/plotbiomes R package for plotting Whittaker biomes with ggplot2 34 0 2024-07-25
69 ms609/Ternary Create ternary plots in R 32 0 2024-08-27
70 globalgov/messydates R package for Extended Date/Time Format (EDTF) 15 0 2024-09-04
71 mlr-org/bbotk Black-box optimization framework for R. 20 0 2024-09-14
72 quantixed/TrackMateR Analysis of TrackMate XML outputs in R 11 0 2024-06-07
73 nyiuab/BhGLM BhGLM (Bayesian hierarchical GLMs and survival models) 19 0 2024-06-11
74 r-hub/cranatgh Mirror CRAN @ GitHub 7 0 2024-09-28
75 tidyverse/reprex Render bits of R code for sharing, e.g., on GitHub or StackOverflow. 738 0 2024-09-10
76 jnweiger/ruida-laser About the protocol between RDWorks, usb-stick, ethernet, and laser. 50 0 2024-08-09
77 csoneson/treeclimbR - 19 0 2024-08-04
78 ropensci/comtradr Functions for Interacting with the UN Comtrade API 64 0 2024-09-24
79 weecology/portalcasting Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics 8 0 2024-08-21
80 DoseResponse/drc Fitting dose-response models in R 21 0 2024-05-21
81 natverse/nat NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons. 64 0 2024-08-09
82 USAID-OHA-SI/glitr SI graphics package to adorn your ggplots 27 0 2024-07-22
83 16EAGLE/basemaps A lightweight package for accessing basemaps from open sources in R 🗺️ 57 0 2024-04-25
84 CastleLi/scBSP - 18 0 2024-05-10
85 drizopoulos/GLMMadaptive GLMMs with adaptive Gaussian quadrature 59 0 2024-06-17
86 sjevelazco/flexsdm Useful tools for constructing species distribution models 52 0 2024-09-19
87 emmanuelparadis/pegas Population and Evolutionary Genetics Analysis System 28 0 2024-06-24
88 scRNA-tools/scRNA-tools Table of software for the analysis of single-cell RNA-seq data. 304 0 2024-09-28
89 NEFSC/READ-PSB-LWT-narwss_rwsas_apps - 12 0 2024-05-14
90 DistanceDevelopment/Distance Simple distance sampling analysis 9 0 2024-09-25
91 ketchbrookanalytics/migrate An R package for building state transition matrices 6 0 2024-07-10
92 enblacar/SCpubr Generate high quality, publication ready visualizations for single cell transcriptomics data. 151 0 2024-08-21
93 trinker/textshape Tools for reshaping text data 49 0 2024-04-01
94 ISNMethodsMeeting/Presentations Methods Meetings Presentation Slides 7 0 2024-08-20
95 taiyun/corrplot A visual exploratory tool on correlation matrix 314 0 2024-08-05
96 taywater/pwdgsi R code for analyzing rain events and water level recessions from green stormwater infrastructure. 6 0 2024-08-20
97 iNZightVIT/iNZight iNZight GUI package using reference classes 13 0 2024-08-27
98 ptitle/epm An R package for the calculation of taxonomic, phenotypic and phylogenetic metrics across grid cells. 12 0 2024-07-18
99 idblr/ndi Computes various geospatial indices of socioeconomic deprivation and disparity in the United States 21 0 2024-09-05
100 PierreMasselot/Paper--2023--LancetPH--EUcityTRM - 9 0 2024-07-05
101 jbryer/ShinyQDA Shiny Application for Qualitative Data Analysis 15 0 2024-09-26
102 neurogenomics/MAGMA_Celltyping Find causal cell-types underlying complex trait genetics 70 0 2024-05-17
103 nanxstats/Rcpi 💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery 36 0 2024-09-18
104 jhelvy/jph A bunch of useful functions for working in R 8 0 2024-07-12
105 stla/jsTreeR A wrapper of the jQuery plugin jsTree. 46 0 2024-07-15
106 themusiclab/nhs Analysis and visualization code and associated data for "Universality and diversity in human song" (Mehr et al., 2019, Science) 8 0 2024-05-20
107 Public-Health-Scotland/learnr-online An interactive, online introduction to R training for employees in Public Health Scotland. 7 0 2024-09-27
108 muschellij2/ichseg ICH Segmentation of CT scans 25 0 2024-09-10
109 nhejazi/txshift 📦 🎲 R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Corrections for Outcome-Dependent Sampling 13 0 2024-09-21
110 sollano/forestmangr R package for forest mensuration and management 16 0 2024-09-10
111 ropensci/daiquiri Data quality reporting for temporal datasets. 35 0 2024-09-02
112 Wedge-lab/dpclust Dirichlet Process based methods for subclonal reconstruction of tumours 28 0 2024-07-02
113 openpharma/roxylint Lint 'roxygen2'-generated documentation 15 0 2024-09-14
114 Lifemap-ToL/LifemapR - 7 0 2024-07-31
115 gdemin/excel.link Convenient Data Exchange between R and Microsoft Excel 56 0 2024-09-17
116 schnorr/starvz R-based visualization techniques for the StarPU runtime 13 0 2024-09-08
117 bsvars/bsvars Bayesian Estimation of Structural Vector Autoregressive Models 41 0 2024-09-25
118 markmfredrickson/RItools Randomization inference tools for R 17 0 2024-08-21
119 gesistsa/rio 🐟 A Swiss-Army Knife for Data I/O 599 0 2024-09-26
120 MD-Anderson-Bioinformatics/NGCHM-R An R library for creating Next-Generation Clustered Heat Maps (NG-CHM) 7 0 2024-09-17
121 biobakery/maaslin3 MaAsLin3: Microbiome Multivariate Association with Linear Models 9 0 2024-09-24
122 hllauca/GR2MSemiDistr A package for hydrological modelling with GR2M at large-scale 12 0 2024-08-25
123 duckdb/duckdb-r The duckdb R package 120 0 2024-09-27
124 markhogue/RadData Nuclear Decay Data for Dosimetric Calculations from ICRP 107 6 0 2024-04-17
125 ropensci/katex Server side math to html rendering in R 37 0 2024-09-28
126 ropensci/MODIStsp An "R" package for automatic download and preprocessing of MODIS Land Products Time Series 155 0 2024-07-28
127 CalCOFI/rCRUX A repository for my work on rCRUX 10 0 2024-06-21
128 USEPA/TADAShiny TADAShiny is a DRAFT R Shiny application (link to web version below) built on top of the TADA R Package (https://github.com/USEPA/TADA). It provides a user friendly, web accessible interface. 11 0 2024-09-25
129 tslumley/survey-SISCER - 7 0 2024-07-17
130 r-tmap/tmaptools Tools for thematic maps 42 0 2024-07-08
131 jokergoo/HilbertCurve Visualize genomic data by Hilbert curve 40 0 2024-09-12
132 joshuaulrich/microbenchmark Infrastructure to accurately measure and compare the execution time of R expressions 94 0 2024-09-04
133 CentreForHydrology/CRHMr R package for CRHM pre- and post- processing 12 0 2024-04-04
134 biometry/bipartite repository for the bipartite R-package for network analysis 35 0 2024-07-15
135 pharmaverse/pharmaversesdtm Test SDTM data for use within the pharmaverse family of packages 13 0 2024-09-18
136 davidycliao/flaiR flairR: Bring Amazing Flair NLP to R 25 0 2024-09-23
137 ropensci/rglobi R library to access species interaction data of http://globalbioticinteractions.org 15 0 2024-09-02
138 nathansam/gameR R colour palettes inspired by video games 6 0 2024-09-23
139 hms-dbmi-cellenics/pipeline The Cellenics pipeline project for dependency-managed work processing. 13 0 2024-09-26
140 nick-ulle/rstatic An R package for static analysis of R code. 41 0 2024-05-12
141 kaaaylaaa/causality-based-trading - 6 0 2024-09-24
142 kolesarm/RDHonest Honest inference in regression discontinuity designs 54 0 2024-08-19
143 WASHNote/jmpwashdata R package for WHO/UNICEF JMP data 6 0 2024-06-05
144 dackerly/PepperwoodVegPlots - 7 0 2024-04-01
145 sylvainschmitt/sdmverse sdmverse is a collaborative metapackage for listing all the metadata of the Species Distribution Modelling (SDM) packages. sdmverse includes a graphical interface available locally or online (see belo ... 20 0 2024-08-29
146 datawookie/trundler Wrapper for Retail Pricing API 14 0 2024-09-16
147 krlmlr/bindr Parametrized active bindings 28 0 2024-09-14
148 R-CoderDotCom/calendR Ready to print calendars with ggplot2 252 0 2024-04-02
149 WorldHealthOrganization/covid-casecountapp Code and actions for generating a COVID-19 case counts dashboard. 6 0 2024-06-14
150 stefanieschneider/unstruwwel Detect and Parse Historic Dates in R 7 0 2024-08-28
151 r-causal/causalworkshop Install Workshop Materials for Causal Inference in R 20 0 2024-08-08
152 njbultman/sleeperapi Helper Functions Around Sleeper API 6 0 2024-06-01
153 igmmgi/DMCfun R/Cpp implementation of the diffusion process model (Diffusion Model for Conflict Tasks, DMC) presented in Automatic and controlled stimulus processing in conflict tasks: Superimposed diffusion proces ... 17 0 2024-09-16
154 rfsaldanha/brpop R data package with yearly (2000 to 2021) Brazilian population estimates from DataSUS/Brazilian Health Ministry, aggregated by state, municipality, sex, and age groups. 14 0 2024-04-11
155 nflverse/nflreadr Efficiently download nflverse data 58 0 2024-09-25
156 r-geoflow/geoflow Tools to Orchestrate Geospatial (Meta)Data Management Workflows and Manage FAIR Services 41 0 2024-08-01
157 Techtonique/bcn Boosted Configuration (Neural) Networks 5 0 2024-09-22
158 hms-dbmi-cellenics/worker k8s worker that executes R code for experiments. 12 0 2024-09-26
159 guyabel/migest Tools for estimating, measuring and working with migration data. 30 0 2024-03-31
160 Bioconductor/AnnotationDbi Manipulation of SQLite-based annotations in Bioconductor 9 0 2024-05-01
161 OuhscBbmc/Wats Code to accompany WATS Plot article 7 0 2024-09-09
162 Bioconductor/genefilter genefilter: methods for filtering genes from high-throughput experiments 5 0 2024-05-01
163 wilkelab/cowplot cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2 702 0 2024-06-28
164 BS1125/CMAverse A suite of functions for reproducible causal mediation analyses 48 0 2024-09-22
165 shaelebrown/TDApplied An R package for statistics and machine learning with persistence diagrams 16 0 2024-09-22
166 mlr-org/paradox ParamHelpers Next Generation 28 0 2024-08-26
167 rmendels/rerddapXtracto xtractomactic using rerddap 14 0 2024-07-19
168 hfgolino/EGAnet - 41 0 2024-09-28
169 tidymodels/modeldata Data Sets Used by tidymodels Packages 22 0 2024-06-19
170 yezhengSTAT/ADTnorm ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration. 20 0 2024-06-14
171 ebabcock/BycatchEstimator A generic model-based bycatch estimation procedure 6 0 2024-07-16
172 ricds/maiac_processing Script and functions to process daily MODIS/MAIAC data to BRDF-corrected 16-day and monthly mosaic composites 7 0 2024-05-13
173 NEON-biodiversity/Ostats O-statistics (community pairwise niche overlap statistics) 7 0 2024-07-22
174 fmmattioni/whippr Tools for Manipulating Gas Exchange Data 📈 11 0 2024-07-24
175 NCEAS/scicomptools Tools Developed by NCEAS Scientific Computing Support Team 10 0 2024-07-11
176 melff/RKernel Yet another R kernel for Jupyter 35 0 2024-09-05
177 cran/TraMineR ❗ This is a read-only mirror of the CRAN R package repository. TraMineR — Trajectory Miner: a Sequence Analysis Toolkit. Homepage: http://traminer.unige.ch 10 0 2024-05-22
178 talgalili/dendextend Extending R's Dendrogram Functionality 152 0 2024-09-28
179 lemuscanovas/synoptReg An R package to compute a synoptic climate classification and spatial regionalization of environmental data 8 0 2024-04-29
180 Zhen-Miao/PACS Probability Model of Accessible Chromatin of Single cells 6 0 2024-08-20
181 Rafael-Ayala/openSkies - 12 0 2024-04-03
182 bsmiguelangel/bayesian-modeling-of-spatial-ordinal-data-from-health-surveys Supplementary information to the paper "Bayesian modeling of spatial ordinal data from health surveys". 6 0 2024-07-18
183 mastoffel/rptR R package to estimate repeatabilities (intra-class coefficients) for Gaussian and non-Gaussian data. 16 0 2024-09-24
184 jamovi-amm/jamm jamovi Advanced Mediation Models 9 0 2024-09-20
185 seandavi/BiocPkgTools Computable build reports, package metadata, and download stats from the Bioconductor project 19 0 2024-05-22
186 TiagoOlivoto/plimanshiny A shinyapp for the pliman package 18 0 2024-09-12
187 eddelbuettel/pkgkitten Create simple packages which pass R CMD check 34 0 2024-08-30
188 rOpenGov/sotkanet R Tools for the Sotkanet demographics indicator database (covering Finland and Europe) 9 0 2024-07-15
189 riatelab/maplegend Create legends for maps and other graphics. 12 0 2024-09-23
190 kjhealy/myriad Themes for ggplot, using the Adobe Myriad typeface. http://kjhealy.github.io/myriad/ 15 0 2024-06-05
191 lbenz730/ncaahoopR An R package for working with NCAA Basketball Play-by-Play Data 197 0 2024-09-10
192 ajdamico/asdfree analyze survey data for free 609 0 2024-09-27
193 DanielDavis12/SiPSiC cell-specific pathway score calculation from single-cell RNA sequencing data 6 0 2024-08-08
194 sdparekh/zUMIs zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs 273 0 2024-07-12
195 elbersb/tidylog Tidylog provides feedback about dplyr and tidyr operations. It provides wrapper functions for the most common functions, such as filter, mutate, select, and group_by, and provides detailed output for ... 585 0 2024-06-11
196 MatthewBJane/ThemePark Fun ggplot themes for popular culture 196 0 2024-05-25
197 BjnNowak/TidyTuesday - 80 0 2024-09-25
198 vdeminstitute/dataset_construction - 6 0 2024-04-02
199 cran/plm ❗ This is a read-only mirror of the CRAN R package repository. plm — Linear Models for Panel Data. Homepage: https://cran.r-project.org/package=plm, https://github.com/ycroissant/plm Rep ... 19 0 2024-04-02
200 afsc-gap-products/gap_bs_data_report Reproducible and annotated code for developing the EBS and NBS Annual Data report and presentation. 9 0 2024-09-26

↓ -- Thanks -- ↓

If it is helpful to you, please star it for easy browsing. Thanks for your support!