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fwp_plot.py
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fwp_plot.py
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# -*- coding: utf-8 -*-
"""
The 'fwp_plot' module contains tools for plotting.
Some of its most useful tools are:
animation_2D : function
Makes a series of 2D plots into an animation.
animation_3D : function
Makes a series of 3D plots into an animation.
add_style : function
Gives a specific style to figure.
@author: Vall
"""
from fwp_analysis import single_extreme
from matplotlib import rcParams, ticker, animation
from matplotlib.colors import LinearSegmentedColormap
from matplotlib.cm import winter, summer, spring, autumn, cool, hot
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
import numpy as np
#%%
def add_text(text, text_position='up', figure_id=None):
"""Prints some text on a matplotlib.pyplot figure.
Parameters
----------
text : str
Text to be printed.
text_position : tuple, str {'up', 'dowm'}
Position of the text to be printed.
figure_id=None : int
ID of the figure where the text will be printed.
If none is given, the current figure is taken as default.
Returns
-------
nothing
Yields
------
matplotlib.annotation
See Also
--------
plot_style
matplotlib.pyplot.gcf
"""
if figure_id is None:
plt.gcf()
else:
plt.figure(figure_id)
if text_position == 'up':
plt.annotate(text, (0.02,0.9), xycoords="axes fraction")
elif text_position == 'down':
plt.annotate(text, (0.02,0.05), xycoords="axes fraction")
else:
plt.annotate(text, text_position, xycords="axes fraction")
plt.show()
#%%
def add_labels_3D(title=None, xlabel=None, ylabel=None, zlabel=None,
figure_id=None, new_figure=False):
"""Labels a 3D graph's axis.
Parameters
----------
title=None : str, optional
Plot's title.
xlabel=None : str, optional
Plot's X label.
ylabel=None : str, optional
Plot's Y label.
zlabel=None : str, optional
Plot's Z label.
figure_id=None : int, optional
A matplotlib figure's ID. If none is specified, it uses the
current active figure.
new_figure=False : bool, optional
Indicates whether to make a new figure or not when
figure_id=None.
Returns
-------
nothing
Yields
------
axis labels
"""
if figure_id is not None:
fig = plt.figure(figure_id)
elif new_figure:
fig = plt.figure()
else:
fig = plt.gcf()
try:
ax = fig.axes
ax[0]
except IndexError:
ax = [plt.axes()]
if xlabel is not None:
for a in ax:
a.set_xlabel(xlabel)
if ylabel is not None:
for a in ax:
ax.set_ylabel(ylabel)
if zlabel is not None:
for a in ax:
ax.set_zlabel(zlabel)
#%%
def add_style(figure_id=None, new_figure=False, **kwargs):
"""Gives a specific style to figure.
This function...
...increases font size;
...increases linewidth;
...increases markersize;
...gives format to axis ticks if specified;
...stablishes new figure dimensions if specified;
...activates grid.
Parameters
----------
figure_id : int, optional
ID of the figure where the text will be printed.
If none is given, the current figure is taken as default.
new_figure=False : bool, optional
Indicates whether to make a new figure or not when
figure_id=None.
Other Parameters
----------------
xaxisformat : format-like str, optional.
Used to update x axis ticks format; i.e.: '%.2e'
yaxisformat : format-like str, optional.
Used to update y axis ticks format; i.e.: '%.2e'
dimensions: list with length 4, optional.
Used to update plot dimensions: [xmin, xmax, ymin, ymax]. Each
one should be a number expressed as a fraction of current
dimensions.
See Also
--------
matplotlib.pyplot.axis
matplotlib.pyplot.gcf
"""
if figure_id is not None:
fig = plt.figure(figure_id)
elif new_figure:
fig = plt.figure()
else:
fig = plt.gcf()
try:
ax = fig.axes
ax[0]
except IndexError:
ax = [plt.axes()]
kwargs_default = dict(
fontsize=12,
linewidth=3,
markersize=6,
dimensions=[1.15,1.05,1,1],
xaxisformat=None,
yaxisformat=None)
kwargs = {key:kwargs.get(key, value) for key, value in kwargs_default.items()}
# kwargs_list = ['fontsize', 'linewidth', 'markersize', 'dimensions']
# kwargs_val = [14, 3, 6, [1.15,1.05,1,1]]
# for key, val in zip(kwargs_list, kwargs_val):
# try:
# kwargs[key]
# except KeyError:
# kwargs[key] = val
rcParams.update({'font.size': kwargs['fontsize']})
rcParams.update({'lines.linewidth': kwargs['linewidth']})
rcParams.update({'lines.markersize': kwargs['markersize']})
for a in ax:
box = a.get_position()
a.set_position([kwargs['dimensions'][0]*box.x0,
kwargs['dimensions'][1]*box.y0,
kwargs['dimensions'][2]*box.width,
kwargs['dimensions'][3]*box.height])
# kwargs_list = ['xaxisformat', 'yaxisformat']
# for key in kwargs_list:
# try:
# kwargs[key]
# except KeyError:
# kwargs[key] = None
if kwargs['xaxisformat'] is not None:
for a in ax:
a.xaxis.set_major_formatter(ticker.FormatStrFormatter(
kwargs['xaxisformat']))
if kwargs['yaxisformat'] is not None:
for a in ax:
a.yaxis.set_major_formatter(ticker.FormatStrFormatter(
kwargs['yaxisformat']))
for a in ax:
a.grid()
plt.show()
#%% More than one 2D plot
def graphs_2D(X, Y, lcolor='blue'):
"""Plots several lines with a given color scale.
Parameters
----------
X : np.array
Data's X values. Can be a 1D n-array or a 2D (nxN) array, where
each column corresponds to a different data series.
Y : np.array
Data's Y values. Must be a 2D (nxN) array, where each column is
a series of data.
lcolor : str {'blue', 'green', 'red', 'violet', 'mixt'}, optional.
Plot lines' color scale.
Returns
-------
nothing
Yields
------
matplotlib.figure
Raises
------
"Y should be a 2D array" : TypeError
If Y doesn't have more than 1 column.
"X, Y should have the same number of columns" : IndexError
If X is not 1D and X, Y don't have the same number of columns.
"X, Y should have the same number of rows" : IndexError
If X, Y don't have the same number of rows.
"lcolor should be..." : TypeError
If leg isn't either a format string nor a list which length is
Y's number of columns.
"""
try:
Y_rows = len(Y[:,0])
Y_cols = len(Y[0,:])
except:
raise TypeError("Y should be a 2D array")
try:
X_rows = len(X[:,0])
X_cols = len(X[0,:])
except:
X_rows = len(X)
X_cols = 1
if X_cols != 1 and X_cols != Y_cols:
raise IndexError("X, Y should have the same number of columns")
if X_rows != Y_rows:
raise IndexError("X, Y should have the same number of rows")
if lcolor == 'blue':
lcolor = [[0, 0, (Y_cols-i)/Y_cols] for i in range(Y_cols)]
if lcolor == 'green':
lcolor = [[0, (Y_cols-i)/Y_cols, 0] for i in range(Y_cols)]
if lcolor == 'red':
lcolor = [[(Y_cols-i)/Y_cols, 0, 0] for i in range(Y_cols)]
if lcolor == 'violet':
lcolor = [[(Y_cols-i)/Y_cols, 0, (Y_cols-i)/Y_cols]
for i in range(Y_cols)]
if lcolor == 'mixt':
lcolor = [[(Y_cols-i)/Y_cols, 0, (i+1)/Y_cols]
for i in range(Y_cols)]
elif len(lcolor) != Y_cols:
message = "lcolor should be a {}-array like".format(Y_cols)
message = message + "or should be in {}".format(['blue',
'green',
'red',
'violet',
'mixt'])
raise TypeError(message)
plt.figure()
if X_cols == 1:
for i in range(Y_cols):
plt.plot(X, Y[:,i], color=lcolor[i])
else:
for i in range(Y_cols):
plt.plot(X[:,i], Y[:,i], color=lcolor[i])
plt.show()
#%%
def graph_3D(X, Y, Z, color_map='winter'):
"""Makes a 3D plot.
Parameters
----------
X : np.array
Data's X coordinates. Should be a 1D array of size X_len.
Y : np.array
Data's Y coordinates. Should be a 1D array of size Y_len.
Z : np.array
Data on a 2D array of size (Y_len, X_len).
color_map='winter' : str {'winter', 'summer', ...}
Color map specifier. Should be on ['spring', 'autumn', 'cool',
'hot', 'winter', 'summer']. If not, must be imported from
matplotlib.cm
Returns
-------
nothing
Yields
------
matplotlib.figure
Raises
------
"X should be array-like" : TypeError
If len(X) raises error.
"Y should be array-like" : TypeError
If len(X) raises error.
"X, Y should have the same legth" : IndexError
If X, Y don't have the same length.
"Z should be a 2D array" : TypeError
If Z is not a 2D array.
"color_map should be..." : TypeError
If color_map is not an allowed string or matplotlib colormap.
"""
try:
X_len = len(X)
except:
raise TypeError("X should be array-like")
try:
Y_len = len(Y)
except:
raise TypeError("Y should be array-like")
try:
Z[:,0]
except:
raise TypeError("Z should be a 2D array")
if X_len != Y_len:
raise IndexError("X, Y should have the same length")
key = ['winter', 'summer', 'autumn', 'spring', 'cool', 'hot']
if color_map not in key:
if not isinstance(color_map,
LinearSegmentedColormap):
raise TypeError("color_map should be a matplotlib colormap",
" or should be on {}".format(key))
X, Y = np.meshgrid(X, Y)
fig = plt.figure()
ax = Axes3D(fig)
ax.plot_surface(X, Y, Z, cmap = color_map) #rstride=1, cstride=1
#ax.contourf(X, Y, Z, cmap=winter)#zdir='z', offset=-2, cmap=winter)
#%%
def graphs_3D(X, Y, Z, Z2, X2=None, Y2=None,
color_map=['winter','summer']):
"""Makes two 3D plots on different subplots.
Parameters
----------
X : np.array
Data's X coordinates. Should be a 1D array of size X_len.
Y : np.array
Data's Y coordinates. Should be a 1D array of size Y_len.
Z : np.array
Data on a 2D array of size (Y_len, X_len).
Z2 : np.array
2nd data on a 2D array.
X2 : np.array, optional
Data's 2nd X coordinates. Should be a 1D array.
Y2 : np.array, optional
Data's 2nd Y coordinates. Should be a 1D array.
color_map=['winter', 'summer'] : list, optional
Color map specifier. Each element should be on ['spring',
'autumn', 'cool', 'hot', 'winter', 'summer']. If not, must be
imported from matplotlib.cm
Returns
-------
nothing
Yields
------
matplotlib.figure
Raises
------
"X should be array-like" : TypeError
If len(X) raises error.
"Y should be array-like" : TypeError
If len(Y) raises error.
"Z should be a 2D array" : TypeError
If Z is not a 2D array.
"X2 should be array-like" : TypeError
If len(X2) raises error.
"Y2 should be array-like" : TypeError
If len(Y2) raises error.
"Z2 should be a 2D array" : TypeError
If Z is not a 2D array.
"color_map should be..." : TypeError
If color_map is not a size 2 list.
"Each color_map should be..." : TypeError
If not all color_map's elements are not an allowed string or
matplotlib colormap.
"""
try:
len(X)
except:
raise TypeError("X should be array-like")
try:
len(Y)
except:
raise TypeError("Y should be array-like")
try:
Z[:,0]
except:
raise TypeError("Z should be a 2D array")
try:
Z2[:,0]
except:
raise TypeError("Z2 should be a 2D array")
if X2 is not None:
try:
len(X2)
except:
raise TypeError("X2 should be array-like")
if Y2 is not None:
try:
len(Y2)
except:
raise TypeError("Y2 should be array-like")
key = ['winter', 'summer', 'autumn', 'spring', 'cool', 'hot']
try:
color_map[1]
except:
raise TypeError("color_map should be a list of length 2")
for cm in color_map:
if cm not in key:
if not isinstance(cm,
LinearSegmentedColormap):
raise TypeError("Each color_map should be a matplotlib",
"colormap or should be on ",
key)
X, Y = np.meshgrid(X, Y)
if X2 is not None:
if Y2 is not None:
X2, Y2 = np.meshgrid(X2, Y2)
else:
X2, Y2 = np.meshgrid(X2, Y)
elif Y2 is not None:
X2, Y2 = np.meshgrid(X, Y2)
else:
X2, Y2 = X, Y
fig = plt.figure(figsize=(13,6),tight_layout=True)
ax = fig.add_subplot(121, projection='3d')
ax.plot_surface(X, Y, Z, cmap = color_map[0])
ax2 = fig.add_subplot(122, projection='3d')
ax2.plot_surface(X2, Y2, Z2, cmap = color_map[1])
fig.show()
#%%
def animation_2D(X, Y, figure_id=None, new_figure=True,
frames_number=30, fps=5,
label_function=lambda i : '{:.0f}'.format(i)):
"""Makes a series of 2D plots into an animation.
Parameters
----------
X : np.array, list
Data's X values. Can be a 1D array of len X_len or a 2D array of
size (n, X_len), where each column corresponds to a different
data series. Can also be a list of 1D arrays.
Y : np.array, list
Data's X values. Should be a 2D array of size (n, Y_len), where
each column corresponds to a different data series. Can also be
a list of 1D arrays.
figure_id=None : int, optional
A matplotlib.pyplot.figure's ID. If specified, it plots on that
figure, which can be already formatted with axis labels, i.e.
new_figure=False : bool, optional
Indicates whether to make a new figure or not when
figure_id=None.
frames_number=30 : int, optional
Animation's total number of frames.
fps=30 : int, optional
Animation's number of frames per second.
label_function : function, optional.
Function that assigns frames' labels. Must take in one int
parameter and return one string.
Returns
-------
animation : matplotlib.animation object
Animation.
Raises
------
"Y should be a 2D array" : TypeError
If Y doesn't have more than 1 column.
"X, Y should have same number of columns" : IndexError
If X is not 1D and X, Y don't have the same number of columns.
"X, Y should have same number of rows" : IndexError
If X, Y don't have the same number of rows.
See Also
--------
matplotlib.animation
fwp_save.saveanimation
"""
# WARNINGS AND VARIABLES' TYPES
if isinstance(Y, np.ndarray):
try:
Y_rows = len(Y[:,0])
Y_cols = len(Y[0,:])
except:
raise TypeError("Y should be a 2D array")
call_Y_series = lambda i : Y[:,i]
frames_total = len(Y[0,:])
if not isinstance(X, np.ndarray):
X = np.array(X).T
try:
X_rows = len(X[:,0])
X_cols = len(X[0,:])
call_X_series = lambda i : X[:,i]
except:
X_rows = len(X)
X_cols = 1
call_X_series = lambda i : X
if X_cols != 1 and X_cols != Y_cols:
raise IndexError("X, Y should have same number of columns")
if X_rows != Y_rows:
raise IndexError("X, Y should have same number of rows")
else:
try:
Y[0][0]
call_Y_series = lambda i : Y[i]
frames_total = len(Y)
except:
raise TypeError("Y should be a 2D list")
X = list(X)
try:
X[0][0]
call_X_series = lambda i : X[i]
except:
call_X_series = lambda i : X
# ACTIVE CODE
if figure_id is not None:
fig = plt.figure(figure_id)
elif new_figure:
fig = plt.figure()
else:
fig = plt.gcf()
try:
ax = fig.axes
ax = ax[0]
except IndexError:
ax = [plt.axes()]
ax.set_xlim((single_extreme(X), single_extreme(X, 'max')))
ax.set_ylim((single_extreme(Y), single_extreme(Y, 'max')))
line, = ax.plot([], [])
label = ax.text(0.02, 0.90, '', transform=ax.transAxes)
index = lambda i : int(frames_total*i/frames_number)
def init():
line.set_data([], [])
label.set_text('')
return line, label
def animate(i):
i = index(i)
line.set_data(call_X_series(i), call_Y_series(i))
label.set_text(label_function(i))
return line, label
anim = animation.FuncAnimation(fig,
animate,
init_func=init,
frames=frames_number,
interval=1000/fps,
blit=True)
return anim;
#%%
def animation_3D(X, Y, Z, figure_id=None, new_figure=True,
color_map='winter', frames_number=30,
label_function=lambda i : '{:.0f}'.format(i)):
"""Makes a series of 3D plots into an animation.
Parameters
----------
X : np.array, list
Data's X values. Can be a 1D n-array of length X_len or a 2D
array of size (T, X_len), where each row corresponds to a
different data series. Can also be a 1D list or a 2D list.
Y : np.array, list
Data's X values. Can be a 1D n-array of length Y_len or a 2D
array of size (T, Y_len), where each row corresponds to a
different data series. Can also be a 1D list or a 2D list.
Z : np.array, list
Data. Should be a 3D array of size (T, Y_len, X_len). Can also
be a 3D list.
figure_id=None : int, optional
A matplotlib.pyplot.figure's ID. If specified, it plots on that
figure, which can be already formatted with axis labels, i.e.
new_figure=False : bool, optional
Indicates whether to make a new figure or not when
figure_id=None.
color_map='winter' : str, optional
Color map specifier. Each element should be on ['spring',
'autumn', 'cool', 'hot', 'winter', 'summer']. If not, must be
imported from matplotlib.cm
frames_number=30 : int, optional
Animation's number of frames.
label_function : function, optional.
Function that assigns frames' labels. Must take in one int
parameter and return one string.
Returns
-------
animation : matplotlib.animation object
Animation.
See Also
--------
matplotlib.animation
fwp_save.saveanimation
"""
if isinstance(Z, np.ndarray):
try:
Z_depth = len(Z[0,0,:])
Z_rows = len(Z[:,0,0])
Z_cols = len(Y[0,:,0])
except:
raise TypeError("Z should be a 3D array")
call_Z_series = lambda i : Z[:,:,i]
if not isinstance(X, np.ndarray):
X = np.array(X).T
try:
X_rows = len(X[:,0])
X_cols = len(X[0,:])
call_X_series = lambda i : X[:,i]
except:
X_rows = len(X)
X_cols = 1
call_X_series = lambda i : X
if not isinstance(Y, np.ndarray):
Y = np.array(Y).T
try:
Y_rows = len(Y[:,0])
Y_cols = len(Y[0,:])
call_Y_series = lambda i : Y[:,i]
except:
Y_rows = len(X)
Y_cols = 1
call_Y_series = lambda i : Y
if Z_rows != X_rows:
raise IndexError("Z, X should have same number of rows")
if Z_cols != Y_rows:
raise IndexError("Z should have as many columns as Y rows")
if Z_depth != X_cols:
raise IndexError("Z should have depth as X has columns")
if Z_depth != Y_cols:
raise IndexError("Z should have depth as Y has columns")
else:
try:
Z[0][0][0]
call_Z_series = lambda i : Z[i]
except:
raise TypeError("Z should be a 3D list")
X = list(X)
try:
X[0][0]
call_X_series = lambda i : X[i]
except:
call_X_series = lambda i : X
Y = list(Y)
try:
Y[0][0]
call_Y_series = lambda i : Y[i]
except:
call_Y_series = lambda i : Y
if figure_id is not None:
fig = plt.figure(figure_id)
elif new_figure:
fig = plt.figure()
else:
fig = plt.gcf()
#ax = axes(xlim=(x0,xf), ylim=(amin(Y),amax(Y)))
ax = fig.gca(projection='3d')
def update(i):
ax.clear()
x = call_X_series(i)
y = call_Y_series(i)
x, y = np.meshgrid(x, y)
ax.plot_surface(x, y, call_Z_series(i), rstride=1, cstride=1,
cmap=color_map, linewidth=0, antialiased=False)
ax.set_zlim(min(min(min(Z))), max(max(max(Z))))
ax.text(0, -2, 0.40, label_function(i), transform=ax.transAxes)
plt.show()
return
anim = animation.FuncAnimation(fig, update, frames=frames_number,
interval=210)
return anim;