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environment.yml
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environment.yml
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name: adni_project
channels:
- conda-forge
- bioconda
- r
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- _r-mutex=1.0.1
- anyio=3.5.0
- argon2-cffi=21.3.0
- argon2-cffi-bindings=21.2.0
- asttokens=2.0.5
- attrs=21.4.0
- babel=2.9.1
- backcall=0.2.0
- backports=1.0
- backports.functools_lru_cache=1.6.4
- binutils_impl_linux-64=2.36.1
- binutils_linux-64=2.36
- bioconductor-annotationdbi=1.56.1
- bioconductor-biobase=2.54.0
- bioconductor-biocgenerics=0.40.0
- bioconductor-biostrings=2.62.0
- bioconductor-genomeinfodb=1.30.0
- bioconductor-genomeinfodbdata=1.2.7
- bioconductor-go.db=3.14.0
- bioconductor-impute=1.68.0
- bioconductor-iranges=2.28.0
- bioconductor-keggrest=1.34.0
- bioconductor-preprocesscore=1.56.0
- bioconductor-s4vectors=0.32.0
- bioconductor-xvector=0.34.0
- bioconductor-zlibbioc=1.40.0
- black=21.12b0
- bleach=4.1.0
- brotli=1.0.9
- brotli-bin=1.0.9
- brotlipy=0.7.0
- bwidget=1.9.14
- bzip2=1.0.8
- c-ares=1.18.1
- ca-certificates=2021.10.8
- cairo=1.16.0
- certifi=2021.10.8
- cffi=1.15.0
- charset-normalizer=2.0.10
- click=8.0.3
- cryptography=36.0.1
- curl=7.81.0
- cycler=0.11.0
- dataclasses=0.8
- debugpy=1.5.1
- decorator=5.1.1
- defusedxml=0.7.1
- entrypoints=0.3
- et_xmlfile=1.0.1
- executing=0.8.2
- flit-core=3.6.0
- font-ttf-dejavu-sans-mono=2.37
- font-ttf-inconsolata=3.000
- font-ttf-source-code-pro=2.038
- font-ttf-ubuntu=0.83
- fontconfig=2.13.1
- fonts-conda-ecosystem=1
- fonts-conda-forge=1
- fonttools=4.28.5
- freetype=2.10.4
- fribidi=1.0.10
- gcc_impl_linux-64=9.4.0
- gcc_linux-64=9.4.0
- gettext=0.19.8.1
- gfortran_impl_linux-64=9.4.0
- gfortran_linux-64=9.4.0
- graphite2=1.3.13
- gsl=2.7
- gxx_impl_linux-64=9.4.0
- gxx_linux-64=9.4.0
- harfbuzz=3.2.0
- icu=69.1
- idna=3.3
- importlib-metadata=4.10.1
- importlib_metadata=4.10.1
- importlib_resources=5.4.0
- ipykernel=6.7.0
- ipython=8.0.1
- ipython_genutils=0.2.0
- jbig=2.1
- jedi=0.18.1
- jinja2=3.0.3
- joblib=1.1.0
- jpeg=9d
- json5=0.9.5
- jsonschema=4.4.0
- jupyter_client=7.1.1
- jupyter_core=4.9.1
- jupyter_server=1.13.3
- jupyterlab=3.2.8
- jupyterlab_pygments=0.1.2
- jupyterlab_server=2.10.3
- kernel-headers_linux-64=2.6.32
- kiwisolver=1.3.2
- krb5=1.19.2
- lcms2=2.12
- ld_impl_linux-64=2.36.1
- lerc=3.0
- libblas=3.9.0
- libbrotlicommon=1.0.9
- libbrotlidec=1.0.9
- libbrotlienc=1.0.9
- libcblas=3.9.0
- libcurl=7.81.0
- libdeflate=1.8
- libedit=3.1.20191231
- libev=4.33
- libffi=3.4.2
- libgcc-devel_linux-64=9.4.0
- libgcc-ng=11.2.0
- libgfortran-ng=11.2.0
- libgfortran5=11.2.0
- libglib=2.70.2
- libgomp=11.2.0
- libiconv=1.16
- liblapack=3.9.0
- libnghttp2=1.43.0
- libnsl=2.0.0
- libopenblas=0.3.18
- libpng=1.6.37
- libsanitizer=9.4.0
- libsodium=1.0.18
- libssh2=1.10.0
- libstdcxx-devel_linux-64=9.4.0
- libstdcxx-ng=11.2.0
- libtiff=4.3.0
- libuuid=2.32.1
- libwebp-base=1.2.2
- libxcb=1.13
- libxml2=2.9.12
- libzlib=1.2.11
- littleutils=0.2.2
- lz4-c=1.9.3
- make=4.3
- markupsafe=2.0.1
- matplotlib-base=3.5.1
- matplotlib-inline=0.1.3
- mistune=0.8.4
- mpmath=1.2.1
- munkres=1.1.4
- mypy_extensions=0.4.3
- nbclassic=0.3.5
- nbclient=0.5.10
- nbconvert=6.4.0
- nbformat=5.1.3
- ncurses=6.2
- nest-asyncio=1.5.4
- notebook=6.4.7
- numpy=1.22.0
- olefile=0.46
- openjpeg=2.4.0
- openpyxl=3.0.9
- openssl=1.1.1l
- outdated=0.2.1
- packaging=21.3
- pandas=1.3.5
- pandas-flavor=0.2.0
- pandoc=2.17.0.1
- pandocfilters=1.5.0
- pango=1.50.3
- parso=0.8.3
- pathspec=0.9.0
- patsy=0.5.2
- pcre=8.45
- pcre2=10.37
- pexpect=4.8.0
- pickleshare=0.7.5
- pillow=8.4.0
- pingouin=0.5.0
- pip=21.3.1
- pixman=0.40.0
- platformdirs=2.3.0
- prometheus_client=0.12.0
- prompt-toolkit=3.0.24
- pthread-stubs=0.4
- ptyprocess=0.7.0
- pure_eval=0.2.1
- pycparser=2.21
- pygments=2.11.2
- pyopenssl=21.0.0
- pyparsing=3.0.6
- pyrsistent=0.18.1
- pysocks=1.7.1
- python=3.9.9
- python-dateutil=2.8.2
- python_abi=3.9
- pytz=2021.3
- pyzmq=22.3.0
- r-acepack=1.4.1
- r-askpass=1.1
- r-assertthat=0.2.1
- r-backports=1.4.1
- r-base=4.1.2
- r-base64enc=0.1_3
- r-bit=4.0.4
- r-bit64=4.0.5
- r-bitops=1.0_7
- r-blob=1.2.2
- r-brio=1.1.3
- r-cachem=1.0.6
- r-callr=3.7.0
- r-checkmate=2.0.0
- r-cli=3.1.0
- r-cluster=2.1.2
- r-codetools=0.2_18
- r-colorspace=2.0_2
- r-crayon=1.4.2
- r-curl=4.3.2
- r-data.table=1.14.2
- r-dbi=1.1.2
- r-deoptimr=1.0_10
- r-desc=1.4.0
- r-diffobj=0.3.5
- r-digest=0.6.29
- r-doparallel=1.0.16
- r-dplyr=1.0.7
- r-dynamictreecut=1.63_1
- r-ellipsis=0.3.2
- r-evaluate=0.14
- r-fansi=1.0.2
- r-farver=2.1.0
- r-fastcluster=1.2.3
- r-fastmap=1.1.0
- r-fit.models=0.64
- r-foreach=1.5.1
- r-foreign=0.8_82
- r-formula=1.2_4
- r-generics=0.1.1
- r-ggplot2=3.3.5
- r-glue=1.6.0
- r-gridextra=2.3
- r-gtable=0.3.0
- r-highr=0.9
- r-hmisc=4.6_0
- r-htmltable=2.4.0
- r-htmltools=0.5.2
- r-htmlwidgets=1.5.4
- r-httr=1.4.2
- r-isoband=0.2.5
- r-iterators=1.0.13
- r-jpeg=0.1_9
- r-jsonlite=1.7.3
- r-knitr=1.37
- r-labeling=0.4.2
- r-lattice=0.20_45
- r-latticeextra=0.6_29
- r-lifecycle=1.0.1
- r-magrittr=2.0.1
- r-mass=7.3_55
- r-matrix=1.4_0
- r-matrixstats=0.61.0
- r-memoise=2.0.1
- r-mgcv=1.8_38
- r-mime=0.12
- r-munsell=0.5.0
- r-mvtnorm=1.1_3
- r-nlme=3.1_155
- r-nnet=7.3_17
- r-openssl=1.4.6
- r-pcapp=1.9_74
- r-pillar=1.6.4
- r-pkgconfig=2.0.3
- r-pkgload=1.2.4
- r-plogr=0.2.0
- r-png=0.1_7
- r-praise=1.0.0
- r-processx=3.5.2
- r-ps=1.6.0
- r-purrr=0.3.4
- r-r6=2.5.1
- r-rcolorbrewer=1.1_2
- r-rcpp=1.0.8
- r-rcurl=1.98_1.5
- r-rematch2=2.1.2
- r-rlang=0.4.12
- r-robust=0.6_1
- r-robustbase=0.93_9
- r-rpart=4.1_15
- r-rprojroot=2.0.2
- r-rrcov=1.6_0
- r-rsqlite=2.2.8
- r-rstudioapi=0.13
- r-scales=1.1.1
- r-stringi=1.7.6
- r-stringr=1.4.0
- r-survival=3.2_13
- r-sys=3.4
- r-testthat=3.1.1
- r-tibble=3.1.6
- r-tidyselect=1.1.1
- r-utf8=1.2.2
- r-vctrs=0.3.8
- r-viridis=0.6.2
- r-viridislite=0.4.0
- r-waldo=0.3.1
- r-wgcna=1.69
- r-withr=2.4.3
- r-xfun=0.29
- r-yaml=2.2.1
- readline=8.1
- requests=2.27.1
- scikit-learn=1.0.2
- seaborn=0.11.2
- seaborn-base=0.11.2
- sed=4.8
- send2trash=1.8.0
- setuptools=59.8.0
- six=1.16.0
- sniffio=1.2.0
- sqlite=3.37.0
- stack_data=0.1.4
- sysroot_linux-64=2.12
- tabulate=0.8.9
- terminado=0.12.1
- testpath=0.5.0
- threadpoolctl=3.0.0
- tk=8.6.11
- tktable=2.10
- tomli=1.2.2
- tornado=6.1
- traitlets=5.1.1
- typed-ast=1.5.1
- typing_extensions=4.0.1
- tzdata=2021e
- urllib3=1.26.8
- wcwidth=0.2.5
- webencodings=0.5.1
- websocket-client=1.2.3
- wheel=0.37.1
- xarray=0.20.2
- xorg-kbproto=1.0.7
- xorg-libice=1.0.10
- xorg-libsm=1.2.3
- xorg-libx11=1.7.2
- xorg-libxau=1.0.9
- xorg-libxdmcp=1.1.3
- xorg-libxext=1.3.4
- xorg-libxrender=0.9.10
- xorg-libxt=1.2.1
- xorg-renderproto=0.11.1
- xorg-xextproto=7.3.0
- xorg-xproto=7.0.31
- xz=5.2.5
- zeromq=4.3.4
- zipp=3.7.0
- zlib=1.2.11
- zstd=1.5.1
- pip:
- clarite==2.2.0
- coloredlogs==15.0.1
- cyvcf2==0.30.14
- humanfriendly==10.0
- pandas-genomics==0.11.0
- rpy2==3.4.5
- scipy==1.6.3
- statsmodels==0.12.2
- tzlocal==2.1
prefix: /home/tomas/miniconda3/envs/adni_project