docker-compose.yml

# Following https://jupyter-docker-stacks.readthedocs.io/en/latest/using/selecting.html
# And https://jupyter-docker-stacks.readthedocs.io/en/latest/using/common.html#docker-options
version: '3.8'
services:
  jupyter-cmf-notebook:
    build:
      dockerfile: Dockerfile
      context: ./
    container_name: jupyter-cmf-notebook
    hostname: jupyter-cmf-notebook

    #workspace is the directory from your home folder that
    #will be mounted inside the docker conatiner with cmf pre-installed
    #dvc_remote is the remote data store for dvc 
    #your .ssh folder is mounted inside the docker conatiner 
    #to enable you to push and pull code from git
    #To-Do 
    # Create these directories in your home folder
    #1. mkdir $HOME/workspace
    #2. mkdir $HOME/dvc_remote
    #or 
    #Change the below lines to relect the appropriate directories
    #1. If your workspace is named "experiment" change the below line
    #$HOME/workspace:/home/jovyan/workspace to
    #$HOME/experiment:/home/jovyan/wokspace
    #2. If your remote is /extmount/data change the line 
    #$HOME/dvc_remote:/home/jovyan/dvc_remote to 
    #/extmount/data:/home/jovyan/dvc_remote
    volumes:
      - $HOME/workspace:/home/jovyan/workspace  
      - $HOME/dvc_remote:/home/jovyan/dvc_remote
      - $HOME/.ssh:/home/jovyan/.ssh
    ports:
      - "8888:8888"
    user: root
    #working_dir: /home/$USER
    environment:
      - NB_USER=$USER
      - NB_GROUP=$GROUP
      - NB_UID=$UID
      - NB_GID=$GID
      - CHOWN_HOME=yes
      - CHOWN_HOME_OPTS= -R
      - GRANT_SUDO=yes
      - DOCKER_STACKS_JUPYTER_CMD=lab
      - JUPYTER_TOKEN=docker
      - JUPYTER_ENABLE_LAB=yes
      - AWS_ACCESS_KEY_ID=${AWS_ACCESS_KEY_ID} # from .env file 
      - AWS_SECRET_ACCESS_KEY=${AWS_SECRET_ACCESS_KEY} #from .env file
      - DVC_REMOTE_URL=${DVC_REMOTE_URL} #from .env file
      - GIT_USER_NAME=${GIT_USER_NAME} # from .env file 
      - GIT_USER_EMAIL=${GIT_USER_EMAIL} #from .env file
      - GIT_REMOTE_URL=${GIT_REMOTE_URL} #from .env file
      - GIT_BRANCH=${GIT_BRANCH} #from .env file
      - DB_URL=mysql://db:33060
      - DB_PASSWORD=${MYSQL_ROOT_PASSWORD} #from .env file
      - NEO4J=TRUE
      - NEO4J_URI=bolt://neo4j:7687
      - NEO4J_USER_NAME=${NEO4J_USER_NAME} #from .env file
      - NEO4J_PASSWD=${NEO4J_PASSWD} #from .env file
      - HTTP_PROXY=${HTTP_PROXY} #from .env file
      - HTTPS_PROXY=${HTTPS_PROXY} #from .env file
    depends_on:
      - neo4j
  neo4j:
    image: neo4j:4.4
    container_name: neo4j
    hostname: neo4j
    ports:
      - "7475:7474"
      - "7688:7687"
    environment:
      - NEO4J_AUTH=${NEO4J_USER_NAME}/${NEO4J_PASSWD}