From 07eb95da3a7b24837475586989f040b63998b142 Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Sun, 17 Apr 2016 17:26:10 +0200 Subject: [PATCH] Update the preprocessing with the new API --- .../feature-preprocessing/pipeline_preprocessing.m | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/pipeline/feature-preprocessing/pipeline_preprocessing.m b/pipeline/feature-preprocessing/pipeline_preprocessing.m index 10f28c8..c0709d0 100644 --- a/pipeline/feature-preprocessing/pipeline_preprocessing.m +++ b/pipeline/feature-preprocessing/pipeline_preprocessing.m @@ -11,9 +11,14 @@ z_size = 1024; % Define a fix sigma value +method_denoising = 'bm3d'; sigma = 190. / 255.; +% Define the method for flattening +method_flattening = 'srinivasan-2014'; + % Define the parameters for the cropping +method_cropping = 'srinivasan-2014'; h_over_rpe = 325; h_under_rpe = 30; width_crop = 340; @@ -41,14 +46,15 @@ vol = vol / max( vol(:) ); % Apply the preprocessing - vol_denoised = denoising_volume( vol, sigma ); + vol_denoised = denoising_volume( vol, method_denoising, sigma ); disp( [ 'Image ', directory_info(idx_file).name, ' denoised' ] ... ); [ baseline_vol, vol_flattened ] = flattening_volume( ... - vol_denoised ); + vol_denoised, method_flattening ); disp( [ 'Image ', directory_info(idx_file).name, ' flattened' ] ... ); - vol_cropped = crop_volume( vol_flattened, baseline_vol, h_over_rpe, ... + vol_cropped = crop_volume( vol_flattened, method_cropping, ... + baseline_vol, h_over_rpe, ... h_under_rpe, width_crop ); disp( [ 'Image ', directory_info(idx_file).name, ' cropped' ] ... );