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Pin ruff checks and codespell checks #756

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cmungall opened this issue May 8, 2024 · 1 comment
Open

Pin ruff checks and codespell checks #756

cmungall opened this issue May 8, 2024 · 1 comment

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@cmungall
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cmungall commented May 8, 2024

Currently there are many failing open PRs with the same ruff warning. We should pin the ruff checks so that whenever ruff changes we don't get everything failing
cmungall added a commit that referenced this issue May 8, 2024
@cmungall
Make ruff happy
57e4b57 
This should not be necessary. See #756
@cmungall cmungall mentioned this issue May 8, 2024
Merged
cmungall added a commit that referenced this issue May 8, 2024
@cmungall
Make ruff happy (#757)
509d9ec 
* Make ruff happy

This should not be necessary. See #756

* make ruff happy
@cmungall cmungall changed the title Pin ruff checks Pin ruff checks and codespell checks May 30, 2024
@cmungall
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Same with codespell

cmungall added a commit that referenced this issue May 31, 2024
@cmungall
fix codespell. See #756
47a7636
cmungall added a commit that referenced this issue May 31, 2024
@cmungall
fix codespell. See #756
8426b3e
cmungall added a commit that referenced this issue May 31, 2024
@cmungall
Adding link to ontogenesis chapter on annotations. (#771)
19ae9d8 
* Adding link to ontogenesis chapter on annotations.

See also OBOAcademy/obook#500

* fix codespell. See #756
cmungall added a commit that referenced this issue Jun 1, 2024
@cmungall
Python level access to query expression language (#769)
d56db0e 
* moving query to own module

* new function

* adding doctests

* docs

* Adding notebook example

* adding dissector

* refactor

* format

* Allow passing of terms on CLI for ontology-only enrichment, fixes #769

Additional changes for #769

* Fixes #770

* fix codespell. See #756

* null

* fmt

* do not apply word normalization

* docs
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@cmungall