DESCRIPTION

Type: Package
Package: Spectre
Title: High-dimensional cytometry and imaging analysis
Version: 1.2.0
Date: 2023-11-12
Authors@R: c(
    person("Thomas", "Ashhurst", , "thomas.ashhurst@sydney.edu.au", role = c("aut", "cre")),
    person("Felix", "Marsh-Wakefield", , "felix.marsh-wakefield@sydney.edu.au", role = "aut"),
    person("Givanna", "Putri", , "putri.g@wehi.edu.au", role = "aut")
  )
Description: A computational toolkit in R for the integration,
    exploration, and analysis of high-dimensional single-cell cytometry
    and imaging data.
License: `use_mit_license()` + file LICENSE
URL: https://github.com/ImmuneDynamics/Spectre
BugReports: https://github.com/ImmuneDynamics/Spectre/issues
Depends: 
    R (>= 3.6.0)
biocViews:
Imports:
    colorRamps,
    data.table,
    dendsort,
    factoextra,
    flowCore,
    FlowSOM,
    ggplot2,
    ggpointdensity,
    ggpubr,
    ggthemes,
    gridExtra,
    gtools,
    irlba,
    parallel,
    patchwork,
    pheatmap,
    RColorBrewer,
    rstudioapi,
    rsvd,
    Rtsne,
    scales,
    scattermore,
    umap,
    uwot,
    viridis
Suggests:
    Biobase,
    caret,
    CytofRUV,
    CytoNorm,
    devtools,
    EnhancedVolcano,
    exactextractr,
    FNN,
    formatR,
    harmony,
    HDF5Array,
    limma,
    qs,
    raster,
    Rcpp,
    rgdal,
    rgeos,
    rhdf5,
    Rphenograph,
    s2,
    Seurat,
    SeuratObject,
    sf,
    SingleCellExperiment,
    sp,
    stars,
    testthat (>= 3.0.0),
    tiff,
    usethis
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1