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Comparison of rDock and Smina

Target: CDK2.

This is a repeat of the work desscribed for validating rDock and Smina for DHFR. Look here for that data and for the methodology.

Results

rDock

tool # actives in top 100
rDock 5
Smina - vina 7
Smina - vinardo 13
Smina - dkoes 0
Smina - ad4 3

Whilst rDock is performing quite well, the enrichment is not as good as for DHFR, and Smina with the vinardo scroring function performs a bit better, especially with early recall. The other Smina scoring functions do not perform well.