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vahaduo calculator.html
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vahaduo calculator.html
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<!DOCTYPE html>
<!--
https://github.com/vahaduo/
-->
<html>
<head>
<meta charset="UTF-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<meta
name="description"
content="Vahaduo: Admixture JS - Rapid estimation of admixture proportions and calculation of Euclidean distances."
/>
<title>Vahaduo: Admixture JS 22.05</title>
<script>
if (
!sessionStorage.getItem("_swa1") &&
document.referrer.indexOf(location.protocol + "//" + location.host) !==
0
) {
fetch(
"https://counter.dev/track?" +
new URLSearchParams({
referrer: "https://www.admixjs.com",
screen: screen.width + "x" + screen.height,
user: "TheCount",
utcoffset: "1",
})
);
}
sessionStorage.setItem("_swa1", "1");
</script>
<style>
* {
scrollbar-width: auto;
scrollbar-color: #00000077 #1c1c1c00;
}
textarea {
cursor: auto;
scrollbar-width: auto;
}
*::-webkit-scrollbar {
width: 6px;
height: 6px;
}
textarea::-webkit-scrollbar {
width: 8px;
height: 8px;
}
*::-webkit-scrollbar-track {
background: #1c1c1c00;
}
*::-webkit-scrollbar-thumb {
background-color: #00000077;
}
*::-webkit-scrollbar-corner {
background: #1c1c1c00;
}
body,
html {
height: 100%;
margin: 0px;
background-color: #555;
font-size: calc(0.5vw + 12px);
font-family: sans-serif;
color: #dadada;
}
nav {
width: 100%;
background-color: #ccc;
background-image: linear-gradient(#ccc, #ddd);
padding-top: 0.4em;
padding-left: 0.4em;
box-sizing: border-box;
}
header {
float: right;
text-align: right;
padding-left: 0 0.4em 0 0.4em;
margin: 0 0.7em 0 1em;
display: inline-block;
color: #9d9d9d;
}
header div {
text-transform: uppercase;
font-size: 0.5em;
}
a {
color: inherit;
text-decoration: inherit;
}
button,
label {
outline: none;
border: none;
margin: 0px;
cursor: pointer;
color: inherit;
font-family: inherit;
}
#support {
float: right;
text-align: initial;
padding: 0;
margin: -0.4em 0 0 0;
height: 2.8em;
width: 2.8em;
background-color: #141518;
display: flex;
align-items: center;
justify-content: center;
color: #ff424d;
}
.tablink {
text-transform: uppercase;
padding: 0.5em;
font-size: 1em;
line-height: 1.4;
background-color: #555;
}
.inactive {
background: none;
color: #666;
}
.inactive:focus,
.inactive:hover {
background-color: #999;
}
label {
display: flex;
justify-content: center;
align-items: center;
}
.buttons {
font-size: 0.7em;
box-sizing: border-box;
border: none;
min-height: 2.5em;
padding-left: 0.7em;
padding-right: 0.7em;
margin-bottom: 0.4em;
color: inherit;
text-transform: uppercase;
background-color: #444;
box-shadow: 2px 2px #333;
line-height: 1em;
}
.buttons:focus,
.buttons:hover {
background-image: linear-gradient(#444, #525252);
}
.buttons:active {
color: #555;
background-color: #999;
background-image: none;
}
button:disabled {
display: none;
}
.dataButtonActive,
.twodistances-first {
position: relative;
}
.dataButtonActive:after,
.twodistances-first:after {
filter: drop-shadow(0px 2px 4px #0c0d0d);
position: absolute;
bottom: 0px;
left: 0px;
width: 100%;
height: 2px;
background-color: #959595;
content: "";
}
.tabinput {
box-sizing: border-box;
border: none;
margin: 0px;
outline: 0px;
padding: 1em;
height: calc(100% - 4em);
min-height: 4em;
width: 100%;
overflow: auto;
resize: none;
color: inherit;
font-size: 0.7em;
white-space: pre;
background: none;
box-shadow: 0 3px #333;
}
#data {
height: calc(100% - 3em);
}
#filteroutput {
box-sizing: border-box;
border: none;
margin: 0px;
outline: 0px;
padding: 1em;
height: calc(100% - 6em);
min-height: 12em;
width: 100%;
overflow: auto;
resize: none;
color: inherit;
font-size: 0.65em;
white-space: pre;
background: #333;
box-shadow: 2px 2px #333;
}
#notification {
font-size: 0.7em;
box-sizing: border-box;
margin: 0.7em;
padding: 0.5em;
width: calc(100% - 1.4em);
cursor: pointer;
display: none;
}
#notification::before {
content: "×";
font-weight: bold;
margin-right: 1em;
}
#multioutput {
box-sizing: border-box;
width: 100%;
padding: 0.7em;
margin-top: 0.7em;
}
.flexcontainer-data {
height: 100%;
}
.flexcontainer-data > .rightpanel {
overflow-y: auto;
}
.flexcontainer,
.flexcontainer-nr,
.flexcontainer-data {
display: flex;
width: 100%;
}
.flexcontainer-nr {
flex-wrap: wrap;
padding-top: 0.32em;
}
/* .flexcontainer-nr > div {
margin: 0 0.2em 0 0.2em;
}*/
.panel {
flex-grow: 1;
box-sizing: border-box;
padding: 0.6em;
}
.rightpanel {
max-width: 30em;
flex-basis: 36%;
}
.leftpanel {
flex-shrink: 0;
flex-basis: 54%;
}
.buttonmulti {
min-width: 13em;
margin: 0.4em 0 0 0.4em;
}
.multiclearok {
min-width: initial;
width: 4em;
}
.multiclearcancel {
min-width: initial;
width: 8.5em;
}
.button100 {
width: 100%;
}
.button80 {
width: 80%;
}
.button20 {
width: 19%;
margin-right: 1%;
}
.input20,
.input-data {
text-align: center;
background-color: #333;
outline: 0px;
}
.div-100 {
flex-grow: 1;
display: flex;
align-items: stretch;
}
.input20 {
width: 20%;
}
.input20:focus,
.input20:hover,
.input-data:focus,
.input-data:hover,
.filterReset:focus:not(:hover) {
background-image: none;
}
.input-data {
text-transform: none;
flex-grow: 1;
padding: 0 0 0 3em;
}
.filterReset {
font-weight: bold;
color: #8d8d8d;
width: 3em;
background-color: #333;
flex-grow: 0;
flex-shrink: 0;
}
.filteropt {
display: flex;
align-items: stretch;
gap: 0.3em;
}
.filteropt > button {
flex-grow: 1;
padding-right: 0.2em !important;
padding-left: 0.2em !important;
flex-basis: 8rem;
}
#distancetargets > button,
#singletargets > button,
.button-data {
text-transform: none;
}
table {
font-size: 0.7em;
border-spacing: 0em;
}
.distances td,
.distances th {
text-align: right;
}
.distances td:first-child {
width: 8em;
}
.distances td:nth-of-type(2),
.distances th:nth-of-type(2) {
text-align: left;
padding-left: 0.7em;
}
.distances th {
padding-bottom: 0.7em;
}
#gradoptsdiff {
display: none;
}
hr {
border: 0px;
border-top: 1px solid #333;
margin: 0em 0em 1.4em 0em;
}
.leftpanel hr:last-of-type,
#multioutput hr:last-of-type {
display: none;
}
.barchartmode2 + td {
padding-left: 0.7em;
}
.barchartmode2 {
min-width: 8em;
}
.barchartmode1 {
width: 100%;
height: 0.5em;
box-shadow: inset 1px 1px 0px 0px #444;
}
.distances,
#singleoutput > table {
-webkit-touch-callout: all;
-webkit-user-select: all;
-khtml-user-select: all;
-moz-user-select: all;
-ms-user-select: all;
user-select: all;
}
.nonselectable {
-webkit-touch-callout: none;
-webkit-user-select: none;
-khtml-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
::-moz-selection {
color: #444;
background: #dcdcdc;
}
::selection {
color: #444;
background: #dcdcdc;
}
.singleinfo {
font-weight: normal;
}
.singleinfo::before {
content: attr(data-nonselectable);
}
.singleheader {
text-align: left;
width: 100%;
padding-bottom: 0.7em;
}
.singleleftcolumn {
text-align: right;
padding-right: 0.7em;
}
.singlerightcolumn {
text-align: left;
width: 100%;
}
.multitablewrapper {
overflow-x: auto;
padding-bottom: 1em;
}
.multisources {
vertical-align: bottom;
white-space: nowrap;
}
.multisources div {
width: 1em;
transform: translate(1.5em, -0.5em) rotate(315deg);
}
.multisources span,
.multiheader span {
cursor: pointer;
}
.multiresult {
min-width: 2em;
padding: 0.7em;
color: white;
text-align: right;
}
.multiheader {
text-align: center;
vertical-align: bottom;
padding-bottom: 0.5em;
}
.multitargets {
padding-right: 1em;
text-align: right;
cursor: pointer;
white-space: nowrap;
}
.multidistance {
padding: 0.7em;
background-color: #777;
}
.multidistchart {
padding: 0em;
min-width: 6em;
}
input[type="file"] {
display: none;
}
input {
font-family: inherit;
}
@media only screen and (max-width: 639px) {
.flexcontainer,
.flexcontainer-data {
flex-direction: column-reverse;
}
.rightpanel {
max-width: none;
}
.flexcontainer-data > .rightpanel {
overflow-y: initial;
}
.flexcontainer-data {
height: initial;
}
.flexcontainer-data {
min-height: 100%;
}
#filteroutput {
min-height: 50vh;
}
}
</style>
<script>
let inputHasChanged = false,
sourceArray,
targetArray,
sourceNum,
targetNum,
dimensions,
addGradient = true,
printZeroes = false,
aggregate = true,
addBarChart = 1,
printZeroesMulti = false,
aggregateMulti = true,
fastModeMulti = false,
cyclesX = 1,
cyclesXMulti = 1,
addDistCol = 1,
addDistColMulti = 1,
addDistColRecal = true,
addDistColMultiRecal = true,
distMode = 0,
twoDistClicked = false,
twoDistFirst = false,
nPop = 0,
af = false,
addRep = false,
dataListId = 0,
dataStore = [],
dataActive = -1,
dataCurrent = false;
function showNotification(message, error = 0) {
const notification = document.getElementById("notification");
notification.innerHTML = message;
notification.style.display = "block";
if (error) {
notification.style.backgroundColor = "red";
notification.style.color = "white";
} else {
notification.style.backgroundColor = "yellow";
notification.style.color = "#666";
}
}
function clearNotification() {
const elmnt = document.getElementById("notification");
elmnt.innerHTML = "";
elmnt.style.display = "none";
}
function clearOutput(elmnt, action, display = "block") {
if (action == "confirm") {
elmnt.nextElementSibling.style.display = display;
elmnt.style.display = "none";
} else if (action == "cancel") {
elmnt.parentNode.previousElementSibling.style.display = display;
elmnt.parentNode.style.display = "none";
} else {
document.getElementById(action).innerHTML = "";
elmnt.parentNode.previousElementSibling.style.display = display;
elmnt.parentNode.style.display = "none";
}
}
function GeneticMap() {
function hslToHex(h) {
s = 100;
l = 50;
h /= 360;
s /= 100;
l /= 100;
let r, g, b;
if (s === 0) {
r = g = b = l; // achromatic
} else {
const hue2rgb = (p, q, t) => {
if (t < 0) t += 1;
if (t > 1) t -= 1;
if (t < 1 / 6) return p + (q - p) * 6 * t;
if (t < 1 / 2) return q;
if (t < 2 / 3) return p + (q - p) * (2 / 3 - t) * 6;
return p;
};
const q = l < 0.5 ? l * (1 + s) : l + s - l * s;
const p = 2 * l - q;
r = hue2rgb(p, q, h + 1 / 3);
g = hue2rgb(p, q, h);
b = hue2rgb(p, q, h - 1 / 3);
}
const toHex = (x) => {
const hex = Math.round(x * 255).toString(16);
return hex.length === 1 ? "0" + hex : hex;
};
return `#${toHex(r)}${toHex(g)}${toHex(b)}`;
}
AaC = {};
AaC[document.getElementById("distances").rows[0].cells[1].innerHTML] =
"target";
for (i = 1; i < document.getElementById("distances").rows.length; i++) {
//source
//name
name =
document.getElementById("distances").rows[i].cells[1].innerHTML;
//color
color = document
.getElementById("distances")
.rows[i].cells[0].getAttribute("style")
.split(";")[1]
.split("(")[1]
.split(",")[0];
//
AaC[name] = [
hslToHex(Number(color)),
document.getElementById("distances").rows[i].cells[0].innerHTML,
]; // COLOR , DISTANCE
console.log(name, color, AaC[name]);
}
//AaC Adjectivals (countries) and colors
localStorage.setItem("myObject", JSON.stringify(AaC));
window.open("map.html", "_blank");
}
function toggleOptions(option, elmnt) {
let msg;
function toggleOption(currentValue, msg) {
if (currentValue) {
elmnt.innerHTML = msg + "no";
} else {
elmnt.innerHTML = msg + "yes";
}
}
switch (option) {
case "printZeroes":
toggleOption(printZeroes, "print zeroes - ");
printZeroes = !printZeroes;
break;
case "aggregate":
toggleOption(aggregate, "aggregate - ");
aggregate = !aggregate;
break;
case "printZeroesMulti":
toggleOption(printZeroesMulti, "print zeroes - ");
printZeroesMulti = !printZeroesMulti;
break;
case "aggregateMulti":
toggleOption(aggregateMulti, "aggregate - ");
aggregateMulti = !aggregateMulti;
break;
case "fastModeMulti":
toggleOption(fastModeMulti, "fast mode - ");
fastModeMulti = !fastModeMulti;
break;
case "cyclesX":
cyclesX == 16 ? (cyclesX = 1) : (cyclesX *= 2);
elmnt.innerHTML = "cycles - " + cyclesX / 4 + "x";
break;
case "cyclesXMulti":
cyclesXMulti == 16 ? (cyclesXMulti = 1) : (cyclesXMulti *= 2);
elmnt.innerHTML = "cycles - " + cyclesXMulti / 4 + "x";
break;
case "addDistCol":
addDistCol == 16 ? (addDistCol = 1) : (addDistCol *= 2);
msg = addDistCol == 1 ? "no" : addDistCol / 8 + "x";
elmnt.innerHTML = "add dist col - " + msg;
if (addDistCol == 1) {
document.getElementById("adcrecal").disabled = true;
} else if (addDistCol == 2) {
document.getElementById("adcrecal").disabled = false;
}
break;
case "addDistColMulti":
addDistColMulti == 16
? (addDistColMulti = 1)
: (addDistColMulti *= 2);
msg = addDistColMulti == 1 ? "no" : addDistColMulti / 8 + "x";
elmnt.innerHTML = "add dist col - " + msg;
if (addDistColMulti == 1) {
document.getElementById("adcmrecal").disabled = true;
} else if (addDistColMulti == 2) {
document.getElementById("adcmrecal").disabled = false;
}
break;
case "addDistColRecal":
toggleOption(addDistColRecal, "recalculate - ");
addDistColRecal = !addDistColRecal;
break;
case "addDistColMultiRecal":
toggleOption(addDistColMultiRecal, "recalculate - ");
addDistColMultiRecal = !addDistColMultiRecal;
break;
case "nPop":
nPop == 0 ? (nPop = 3) : (nPop += 1);
if (nPop > 5) nPop = 0;
msg = nPop == 0 ? "no" : nPop + " populations";
elmnt.innerHTML = "reduce - " + msg;
break;
case "addBarChart":
addBarChart == 2 ? (addBarChart = 0) : (addBarChart += 1);
msg = addBarChart == 0 ? "no" : "mode " + addBarChart;
elmnt.innerHTML = "add bar chart - " + msg;
break;
case "distMode":
distMode == 3 ? (distMode = 0) : (distMode += 1);
switch (distMode) {
case 0:
msg = "single";
document.getElementById("gradopts").style.display = "block";
document.getElementById("gradoptsdiff").style.display = "none";
clearTwoDistOpt();
break;
case 1:
msg = "difference ( ac - bc )";
document.getElementById("gradopts").style.display = "none";
document.getElementById("gradoptsdiff").style.display = "block";
break;
case 2:
msg = "ratio ( ac / bc )";
document.getElementById("gradoptsdiff").style.display = "none";
break;
case 3:
msg =
"d3 ( ac - bc ) / ( ac + bc )";
break;
}
elmnt.innerHTML = "mode - " + msg;
break;
case "addGradient":
msg = "add gradient - ";
if (addGradient) {
elmnt.nextElementSibling.style.display = "none";
elmnt.innerHTML = msg + "no";
} else {
elmnt.nextElementSibling.style.display = "block";
elmnt.innerHTML = msg + "yes";
}
addGradient = !addGradient;
break;
case "addRep":
if (addRep) {
elmnt.innerHTML = "Add to:";
} else {
elmnt.innerHTML = "Replace:";
}
addRep = !addRep;
break;
}
}
function validateDistMaxOut(elmnt) {
const nextValue = Number(elmnt.value.replace(/\,/g, "\."));
if (Number.isInteger(nextValue) && nextValue > 0) {
elmnt.value = nextValue;
} else {
elmnt.value = elmnt.defaultValue;
}
}
function validateGradFromTo(elmnt) {
const nextValue = Number(elmnt.value.replace(/\,/g, "\."));
if (isNaN(nextValue) || nextValue < 0) {
elmnt.value = elmnt.defaultValue;
} else {
elmnt.value = nextValue;
}
}
function dispatcher(elmnt, targetId) {
if (elmnt.parentNode.id == "distancetargets") {
if (distMode == 0) {
distances(targetId);
} else {
twoDistances(targetId, elmnt);
}
} else {
singleFMC(targetId);
}
}
function runAllDist() {
let i;
if (distMode == 0) {
for (i = 0; i < targetNum; i++) {
distances(i);
}
} else {
if (targetNum < 2) {
showNotification(
"At least two TARGET samples are needed to make a comparison.",
0
);
} else if (twoDistFirst === false) {
showNotification(
"Select first TARGET sample to make a comparison.",
0
);
} else {
for (i = 0; i < targetNum; i++) {
if (i !== twoDistFirst) {
twoDistances(i);
}
}
}
}
}
function runAllSingle() {
let i;
for (i = 0; i < targetNum; i++) {
singleFMC(i);
}
}
function randomFromRange(min, max) {
return Math.floor(Math.random() * (max - min)) + min;
}
function subArray(arr1, arr2) {
const subtracted = arr1.map(function (elmnt, index) {
return elmnt - arr2[index];
});
return subtracted;
}
function addArray(arr1, arr2) {
const added = arr1.map(function (elmnt, index) {
return elmnt + arr2[index];
});
return added;
}
function getArraySum(arr) {
function arrSum(total, num) {
return total + num;
}
return arr.reduce(arrSum);
}
function squareArray(arr) {
const squared = arr.map(function (elmnt) {
return elmnt * elmnt;
});
return squared;
}
function clearTwoDistOpt() {
if (twoDistClicked !== false) {
twoDistClicked.classList.remove("twodistances-first");
twoDistClicked = false;
}
twoDistFirst = false;
}
function twoDistances(targetId, elmnt) {
if (targetNum < 2) {
showNotification(
"At least two TARGET samples are needed to make a comparison.",
0
);
return;
}
if (twoDistFirst === false) {
twoDistFirst = targetId;
twoDistClicked = elmnt;
twoDistClicked.classList.add("twodistances-first");
return;
}
if (twoDistFirst === targetId) {
twoDistClicked.classList.remove("twodistances-first");
twoDistClicked = false;
twoDistFirst = false;
return;
}
let i,
output = "",
resultsNum,
getDistanceA,
getDistanceB,
distanceCurrent,
compare,
comparisonType = "",
comparisonValue,
distMaxOut = document.getElementById("distmaxout").value;
const targetA = targetArray[twoDistFirst].slice(),
targetB = targetArray[targetId].slice(),
distances = [],
gradFrom = document.getElementById("gradfromdiff").value,
gradTo = document.getElementById("gradtodiff").value;
function ratio(l, r) {
return l / r;
}
function diff(l, r) {
return l - r;
}
function d3(l, r) {
return (l - r) / (l + r);
}
function dist(currentTarget1, currentTarget2) {
let getDistance = subArray(currentTarget2, currentTarget1);
getDistance.shift();
getDistance = squareArray(getDistance);
getDistance = getArraySum(getDistance);
getDistance = Math.sqrt(getDistance);
return getDistance;
}
function retrieveSrcArrEl(currentSource) {
return sourceArray[currentSource];
}
function upperDecorator(distance) {
let output = "";
if (addGradient) {
output += ' style="color:black;background-color:hsl(';
if (distMode == 1) {
let distAbs = Math.abs(distance);
if (distAbs < gradFrom) {
output += 60;
} else if (distAbs > gradTo) {
output += 180;
} else {
output +=
60 + ((distAbs - gradFrom) / (gradTo - gradFrom)) * 120;
}
} else if (distMode == 2) {
output += 180 - distance * 120;
} else {
output += 60 - distance * 120;
}
output += ', 100%, 50%)"';
}
return output + ">" + distance.toFixed(8);
}
function lowerDecorator(distance) {
let output = "";
if (addGradient) {
output += ' style="color:black;background-color:hsl(';
if (distMode == 1) {
if (distance < gradFrom) {
output += 60;
} else if (distance > gradTo) {
output += 300;
} else {
output +=
60 - ((distance - gradFrom) / (gradTo - gradFrom)) * 120;
}
} else if (distMode == 2) {
output += 300 + (1 / distance) * 120;
} else {
output += 60 - distance * 120;
}
output += ', 100%, 50%)"';
}
return output + ">" + distance.toFixed(8);
}
switch (distMode) {
case 1:
comparisonType = "difference: ( AC - BC )";
compare = diff;
comparisonValue = 0;
break;
case 2:
comparisonType = "ratio: ( AC / BC )";
compare = ratio;
comparisonValue = 1;
break;
case 3:
comparisonType =
"D3: ( AC - BC ) / ( AC + BC )";
compare = d3;
comparisonValue = 0;
break;
}
for (i = 0; i < sourceNum; i++) {
getDistanceL = dist(retrieveSrcArrEl(i), targetA);
getDistanceR = dist(retrieveSrcArrEl(i), targetB);
if (getDistanceL > 0 && getDistanceR > 0) {
let tempArr = ["", ""];
tempArr[0] = sourceArray[i][0];
tempArr[1] = compare(getDistanceL, getDistanceR);
distances.push(tempArr);
}
}
resultsNum = distances.length;
if (resultsNum < distMaxOut) {
distMaxOut = resultsNum;
}
distances.sort(function (a, b) {
return b[1] - a[1];
});
output +=
'<table class="distances"><tr><th colspan="2" style="text-align:left">Distance ' +
comparisonType +
" ↑" +
"<br>A: " +
targetA[0] +
"<br>B: " +
targetB[0] +
"<br>C: ↴</th>";
for (i = 0; i < distMaxOut; i++) {
distanceCurrent = distances[resultsNum - 1 - i][1];
if (distanceCurrent >= comparisonValue) {
if (i == 0) {
output +=