From 989d3e4ddde1aeefeb92ef33d8c02bd62ee7bdfe Mon Sep 17 00:00:00 2001
From: anaik <anaik@sv2218.zit.bam.de>
Date: Mon, 11 Dec 2023 09:54:38 +0100
Subject: [PATCH 1/3] remove duplicated integrated arg in cli and fix typo

---
 lobsterpy/cli.py | 16 +++++++++-------
 1 file changed, 9 insertions(+), 7 deletions(-)

diff --git a/lobsterpy/cli.py b/lobsterpy/cli.py
index 1238263f..30af0374 100644
--- a/lobsterpy/cli.py
+++ b/lobsterpy/cli.py
@@ -371,7 +371,8 @@ def get_parser() -> argparse.ArgumentParser:
     # Argument specific to COHPs / COOPs / COBIs plots
     coxx_plotting_args = argparse.ArgumentParser(add_help=False)
     coxx_plotting_args.add_argument(
-        "-integr--integrated",
+        "-integr",
+        "--integrated",
         dest="integrated",
         action="store_true",
         help="Show integrated cohp/cobi/coop plots.",
@@ -646,6 +647,7 @@ def get_parser() -> argparse.ArgumentParser:
             structure_file,
             plotting_parent,
             advanced_plotting_args,
+            coxx_plotting_args,
             analysis_switch,
         ],
         help="Plot specific COHPs/COBIs/COOPs based on bond numbers.",
@@ -656,12 +658,12 @@ def get_parser() -> argparse.ArgumentParser:
         type=int,
         help="List of bond numbers, determining COHPs/COBIs/COOPs to include in plot.",
     )
-    plot_parser.add_argument(
-        "-integr",
-        "--integrated",
-        action="store_true",
-        help="Show integrated cohp/cobi/coop plots.",
-    )
+    # plot_parser.add_argument(
+    #     "-integr",
+    #     "--integrated",
+    #     action="store_true",
+    #     help="Show integrated cohp/cobi/coop plots.",
+    # )
     plot_grouping = plot_parser.add_mutually_exclusive_group()
     plot_grouping.add_argument(
         "--summed",

From 07b71904cadce66072ca2303ae2f61eece77682d Mon Sep 17 00:00:00 2001
From: anaik <anaik@sv2218.zit.bam.de>
Date: Mon, 11 Dec 2023 09:55:18 +0100
Subject: [PATCH 2/3] limit docs deployment to new releases

---
 .github/workflows/docs.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index b1ffa939..c16a931a 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -4,6 +4,8 @@ on:
   workflow_dispatch:
   push:
     branches: [main]
+  release:
+    types: [ published ]
 
 # set GITHUB_TOKEN permissions to allow deployment to GitHub Pages
 permissions:

From 2ac489ad1c8aaff764ebbde035cdbca5532ae43f Mon Sep 17 00:00:00 2001
From: anaik <anaik@sv2218.zit.bam.de>
Date: Mon, 11 Dec 2023 10:56:13 +0100
Subject: [PATCH 3/3] remove commented lines

---
 lobsterpy/cli.py | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/lobsterpy/cli.py b/lobsterpy/cli.py
index 30af0374..4fda1c77 100644
--- a/lobsterpy/cli.py
+++ b/lobsterpy/cli.py
@@ -658,12 +658,6 @@ def get_parser() -> argparse.ArgumentParser:
         type=int,
         help="List of bond numbers, determining COHPs/COBIs/COOPs to include in plot.",
     )
-    # plot_parser.add_argument(
-    #     "-integr",
-    #     "--integrated",
-    #     action="store_true",
-    #     help="Show integrated cohp/cobi/coop plots.",
-    # )
     plot_grouping = plot_parser.add_mutually_exclusive_group()
     plot_grouping.add_argument(
         "--summed",