From 2bb750ad3d9b3521b99ed51d3db2ebbe885e4f61 Mon Sep 17 00:00:00 2001 From: Konrad Rokicki Date: Tue, 26 Nov 2024 17:01:01 -0500 Subject: [PATCH] updated publications etc --- assets/scss/_styles_project.scss | 12 ++++++ assets/scss/_variables_project_after_bs.scss | 4 +- content/_index.html | 21 ++++------ content/publications.html | 43 ++++++++++++++++---- content/team.html | 7 +++- 5 files changed, 64 insertions(+), 23 deletions(-) diff --git a/assets/scss/_styles_project.scss b/assets/scss/_styles_project.scss index b91a27c..9041935 100644 --- a/assets/scss/_styles_project.scss +++ b/assets/scss/_styles_project.scss @@ -21,4 +21,16 @@ .aligncenter { display: block; margin: 0 auto; +} + +.publication-list { + list-style-type: none; +} + +.publication-list li { + margin-bottom: 10pt; +} + +.text-horta-secondary3 { + color: $horta-secondary3; } \ No newline at end of file diff --git a/assets/scss/_variables_project_after_bs.scss b/assets/scss/_variables_project_after_bs.scss index d1356da..c5408da 100644 --- a/assets/scss/_variables_project_after_bs.scss +++ b/assets/scss/_variables_project_after_bs.scss @@ -2,12 +2,14 @@ $horta-primary: #3e406a; $horta-dark: #2a2c4c; $horta-secondary: #bfac4f; $horta-secondary2: #f6e793; +$horta-secondary3: #b3b5df; $custom-colors: ( 'horta-primary': $horta-primary, 'horta-dark': $horta-dark, 'horta-secondary': $horta-secondary, - 'horta-secondary2': $horta-secondary2 + 'horta-secondary2': $horta-secondary2, + 'horta-secondary3': $horta-secondary3 ); $theme-colors: map-merge($theme-colors, $custom-colors); \ No newline at end of file diff --git a/content/_index.html b/content/_index.html index 3fce9dc..655084b 100644 --- a/content/_index.html +++ b/content/_index.html @@ -67,27 +67,22 @@

The Next-Generation Platform for Neuron Tracing

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+

Features

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HortaCloud combines state-of-the-art volumetric visualization, advanced features for 3D neuronal annotation, and real-time multi-user collaboration - with a set of enterprise-grade backend microservices for moving and processing large amounts of data rapidly and securely. - Users can load multi-terabyte image volumes with up to three signal channels, and visualize them in 3D with multiscale volume rendering. - An optimized workflow allows annotators to efficiently trace long range projection neurons in light microscopy data, including easy merging/splitting of skeletal reconstructions. - Collaboration features allow a team of annotators to work together to annotate different neurons in a single volume, or build consensus by annotating the same neurons.

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+

Horta also provides other useful features, including:

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The Next-Generation Platform for Neuron Tracing

Software architecture

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+

This software is built on the Janelia Workstation platform, leveraging Java NetBeans to provide modularity and extensibility. The backend consists of Java-based microservices that scale to handle large volumes of data. Metadata is stored in MongoDB and real-time event handling is implemented using RabbitMQ. @@ -105,7 +100,7 @@

Software architecture

We deploy both the client and backend services to the AWS Cloud, leveraging AWS AppStream to process the 3D rendering and virtualize the desktop infrastructure.

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+

Image data is stored on AWS S3, and we provide many open data sets on AWS Open Data registry that are immediately accessible in the application.

diff --git a/content/publications.html b/content/publications.html index b15c05f..1a9c017 100644 --- a/content/publications.html +++ b/content/publications.html @@ -11,15 +11,44 @@

Publications

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If you use HortaCloud in your work, please cite the following publications:

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  • -Winnubst J, Bas E, Ferreira TA, Wu Z, Economo MN, Edson P, Arthur BJ, Bruns C, Rokicki K, Schauder D, Olbris DJ, Murphy SD, Ackerman DG, Arshadi C, Baldwin P, Blake R, Elsayed A, Hasan M, Ramirez D, Dos Santos B, -Weldon M, Zafar A, Dudman JT, Gerfen CR, Hantman AW, Korff W, Sternson SM, Spruston N, Svoboda K, Chandrashekar J. -Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain. Cell. 2019 Sep 19;179(1):268-281.e13. -doi: 10.1016/j.cell.2019.07.042 -
    • + + +

    +HortaCloud has been featured in the following publications: +

    + + + + + {{< /blocks/section >}} \ No newline at end of file diff --git a/content/team.html b/content/team.html index 4f8f672..ab2769a 100644 --- a/content/team.html +++ b/content/team.html @@ -9,6 +9,11 @@ {{< blocks/section color="horta-dark" >}} +
    +HortaCloud was primarily developed by Scientific Computing Software at Janelia Research Campus in collaboration with the Janelia MouseLight project team. +
    +Contributors are listed in alphabetical order. Special thanks to Brie Yarbrough for creating the HortaCloud logo. +

    Advisors

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    Rob Svirskas
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    Special thanks to Brie Yarbrough for creating the HortaCloud logo.

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