protein-meets-llm.md

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Protein meets LLM

Title needs to be reconsidered. e.g., protein fondation model: protein fondation model (focus on the protein itself, e.g., ESM3), protein+X fondation model (X=nature language, ...)

	Title	Pub.&Year	Notes
	ProLLaMA: A Protein Language Model for Multi-Task Protein Language Processing	Arxiv '2024
	Prot2Token: A multi-task framework for protein language processing using autoregressive language modeling	ICML '2024	code
	InstructPLM: Aligning Protein Language Models to Follow Protein Structure Instructions	bioRxiv '2024	code, protein design
	ProteinCLIP: enhancing protein language models with natural language	bioRxiv '2024
	InstructProtein: Aligning Human and Protein Language via Knowledge Instruction	ACL '2024
	PROTLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training	ACL '2024	code
ESM3	Simulating 500 million years of evolution with a language model	bioRxiv '2024	code, blog
	ProLLM: Protein Chain-of-Thoughts Enhanced LLM for Protein-Protein Interaction Prediction	COLM '2024
	ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding	Arxiv '2024

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