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about.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/html4/loose.dtd">
<html>
<title>About</title>
<h3>About VolcaNoseR</h3>
<p>The VolcaNoseR web app is a dedicated tool for exploring and plotting Volcano Plots. Users can explore the data with a pointer (cursor) to see information of individual datapoints. The threshold for the effect size (fold change) or significance can be dynamically adjusted. The plot can be annotated to show genes/proteins based on their top ranking or based on user input.
More details about the VolcaNoseR app can be found in our <a href="https://www.nature.com/articles/s41598-020-76603-3">publication</a></p>
<p>The plot can be saved as a PNG file or a PDF file, which can be opened and edited with Adobe Illustrator to allow for fine adjustments of the lay-out.</p>
<h4>Contact</h4>
<p>VolcaNoseR is created and maintained by Joachim Goedhart and Martijn Luijsterburg</br>
Bug reports and feature requests can be communicated in several ways:
<ul>
<li>Github: <a href="https://github.com/JoachimGoedhart/VolcaNoseR/issues">https://github.com/JoachimGoedhart/VolcaNoseR/issues</a></li>
<li>Twitter: <a href="https://twitter.com/joachimgoedhart">@joachimgoedhart</a></li>
<li>Email: <a href="mailto:
j.goedhart@uva.nl">j.goedhart@uva.nl</a></li>
</ul>
<h4>Source</h4>
<p>Source code is available at <a href="https://github.com/JoachimGoedhart/VolcaNoseR">github/JoachimGoedhart</a></br>
Please cite our publication if you use the app: "VolcaNoseR is a web app for creating, exploring, labeling and sharing volcano plots" - doi: <a href="https://doi.org/10.1038/s41598-020-76603-3">10.1038/s41598-020-76603-3</a></p>
</br>
</br>
</p>
<h4>Credits</h4>
<p>There are several Shiny apps for Volcano plots that have served as a source of inspiration:</br>
<ul>
<li><a href="https://github.com/vovalive/volcanoR">VolcanoR</a></li>
<li><a href="https://github.com/hardingnj/volcanoshiny">Volcanoshiny</a></li>
<li><a href="https://github.com/stemicha/VolcanoPlot_shiny_app">VolcanoPlot_shiny_app</a></li>
</ul>
</p>
<h4>What else?</h4>
<p>Find our other dataViz apps at <a href="https://huygens.science.uva.nl">https://huygens.science.uva.nl</a></p>
</br>
</html>