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Kafri-Lab / Cell-t-SNE Public

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Cell-t-SNE

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Cell-t-SNE

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to_do.txt

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main.py segmentation --img_dir /path_to_images --output_csv 'foo.csv'

main.py crop_images --csv 'ResultTable_curated_t193-WT-LFS.csv'

main.py tsne_images --csv 'ResultTable_curated_t193-WT-LFS.csv' --res 70 --perplexity 30

main.py image_scatter --csv 'ResultTable_curated_t193-WT-LFS.csv' -x tsne1 -y tsne2 --dpi 650

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