From f5757cc53eae222b637a85a8268ad955e8f99452 Mon Sep 17 00:00:00 2001
From: kevinmenden <kevin.menden@t-online.de>
Date: Wed, 16 Dec 2020 17:38:28 +0100
Subject: [PATCH] cleaned up dependencies

---
 docs/changelog.md | 1 +
 setup.py          | 9 +++------
 2 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/docs/changelog.md b/docs/changelog.md
index bb5e632..2f0e14a 100644
--- a/docs/changelog.md
+++ b/docs/changelog.md
@@ -3,6 +3,7 @@
 ### Version 0.9.6
 + fixed Dockerfile (switched to pip installation)
 + added better error messages to `simulate` command
++ cleaned up dependencies
 
 ### Version 0.9.5
 + added `scaden simulate` command to perform bulk simulation and training file creation
diff --git a/setup.py b/setup.py
index b2a448a..e6c6e4a 100644
--- a/setup.py
+++ b/setup.py
@@ -30,13 +30,10 @@
         'pandas',
         'numpy',
         'scikit-learn',
-        'scipy',
         'tensorflow>=2.0',
         'anndata',
         'tqdm',
-        'click'
-    ],
-    extras_require = {
-        'scanpy':  ["scanpy", "matplotlib", "seaborn"]
-    }
+        'click',
+        'h5py~=2.10.0'
+    ]
 )