From 0ff9cc01fa8bfb36f4d03d1a36e727a1800954c5 Mon Sep 17 00:00:00 2001
From: Shane O'Connor <spiderbaby@gmail.com>
Date: Tue, 7 Apr 2015 17:24:09 -0700
Subject: [PATCH] Editing input README to reflect new files.

---
 input/README.rst | 50 ++++--------------------------------------------
 1 file changed, 4 insertions(+), 46 deletions(-)

diff --git a/input/README.rst b/input/README.rst
index 4186fce..e8487a7 100644
--- a/input/README.rst
+++ b/input/README.rst
@@ -2,56 +2,14 @@
 Input data
 ====================================
 
-Input data for this benchmark consists of 40 structures from the PDB.
+The input data for this benchmark consists of 40 structures from the PDB, each of which represents a Pfam domain. The
+mapping between the structures and Pfam domains can be found in JSON or CSV format in json/domains.json and csv/domains.csv
+respectively.
 
-These structures represent the following 40 domains from Pfam:
-
-PF00013
-PF00018
-PF00041
-PF00072
-PF00076
-PF00085
-PF00111
-PF00168
-PF00169
-PF00179
-PF00226
-PF00240
-PF00249
-PF00254
-PF00313
-PF00327
-PF00355
-PF00364
-PF00381
-PF00439
-PF00486
-PF00498
-PF00542
-PF00550
-PF00581
-PF00582
-PF00595
-PF00691
-PF00708
-PF01029
-PF01035
-PF01451
-PF01627
-PF01833
-PF02823
-PF04002
-PF07679
-PF07686
-PF08666
-PF12844
-
-The selection of these Pfam domains and their structures is described in the following paper:
+The selection of the Pfam domains and their structures is described in the following paper:
 
 Computational protein design quantifies structural constraints on amino acid covariation. 2013.
 Ollikainen N, Kortemme T. PLoS Comput Biol 9(11):e1003313. `doi: 10.1371/journal.pcbi.1003313 <http://dx.doi.org/10.1371/journal.pcbi.1003313>`_. Epub 2013 Nov 14.
 
-
 This directory also includes two res files, one for repacking all positions (NATAA.res) and one for designing all positions (ALLAA.res).