From 26d3ab78925933e77ab221e6947d40bf694c127f Mon Sep 17 00:00:00 2001 From: krishnaTO Date: Fri, 25 Mar 2022 15:33:33 -0400 Subject: [PATCH] imported pato:Phase per issue #169 --- src/ontology/imports/pato_import.owl | 4159 +++++++++++++++++++++++++- src/ontology/imports/pato_terms.txt | 1 + 2 files changed, 4012 insertions(+), 148 deletions(-) diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl index 34e7c2a..cfb7992 100644 --- a/src/ontology/imports/pato_import.owl +++ b/src/ontology/imports/pato_import.owl @@ -80,6 +80,12 @@ + + + + + + @@ -147,30 +153,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - @@ -836,28 +818,6 @@ - - - - - - - - - - - - - - - - - - true - - - - @@ -937,28 +897,6 @@ - - - - - - - - - - - - - - - - - - true - - - - @@ -1141,6 +1079,14 @@ + + + + + + + + @@ -1229,9 +1175,80 @@ - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + @@ -1246,18 +1263,9 @@ - - - - entity - - - - - @@ -1280,7 +1288,6 @@ - @@ -1387,7 +1394,8 @@ - + + A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts. role @@ -1408,27 +1416,3613 @@ An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. - material entity material entity - + + + + + Elementary particle not affected by the strong force having a spin 1/2, a negative elementary charge and a rest mass of 0.000548579903(13) u, or 0.51099906(15) MeV. + electron + Elektron + beta + beta(-) + beta-particle + e + e(-) + e- + negatron + electron + + + + + electron + ChEBI + + + + + electron + IUPAC + + + + + + electron + KEGG_COMPOUND + + + + + Elektron + ChEBI + + + + + beta + IUPAC + + + + + beta(-) + ChEBI + + + + + beta-particle + IUPAC + + + + + e + IUPAC + + + + + e(-) + UniProt + + + + + e- + KEGG_COMPOUND + + + + + negatron + IUPAC + + + + + + + + + A Bronsted acid derived from one or more inorganic compounds. Inorganic acids (also known as mineral acids) form hydrons and conjugate base ions when dissolved in water. + inorganic acids + mineral acid + mineral acids + inorganic acid + + + + + inorganic acids + ChEBI + + + + + mineral acid + ChEBI + + + + + mineral acids + ChEBI + + + + + + + + + A molecular entity that can transfer ("donate") an electron, a pair of electrons, an atom or a group to another molecular entity. + Donor + Donator + donneur + donor + + + + + Donor + KEGG_COMPOUND + + + + + Donator + ChEBI + + + + + donneur + ChEBI + + + + + + + + + + + + + + + + A phosphate ion that is the conjugate base of hydrogenphosphate. + phosphate + tetraoxidophosphate(3-) + tetraoxophosphate(3-) + tetraoxophosphate(V) + Orthophosphate + PHOSPHATE ION + PO4(3-) + Phosphate + [PO4](3-) + phosphate(3-) + + + + + phosphate + IUPAC + + + + + + tetraoxidophosphate(3-) + IUPAC + + + + + + tetraoxophosphate(3-) + IUPAC + + + + + + tetraoxophosphate(V) + IUPAC + + + + + + Orthophosphate + KEGG_COMPOUND + + + + + PHOSPHATE ION + PDBeChem + + + + + PO4(3-) + IUPAC + + + + + Phosphate + KEGG_COMPOUND + + + + + [PO4](3-) + IUPAC + + + + + + + + + A monoatomic or polyatomic species having one or more elementary charges of the electron. + Anion + anion + Anionen + aniones + anions + anion + + + + + Anion + ChEBI + + + + + anion + ChEBI + + + + + anion + IUPAC + + + + + + Anionen + ChEBI + + + + + aniones + ChEBI + + + + + anions + IUPAC + + + + + + + + + An organic molecule or ion (usually a metal ion) that is required by an enzyme for its activity. It may be attached either loosely (coenzyme) or tightly (prosthetic group). + cofactor + cofactors + cofactor + + + + + cofactor + IUPAC + + + + + cofactors + IUPAC + + + + + + + + + + Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity. + molecular entity + entidad molecular + entidades moleculares + entite moleculaire + molecular entities + molekulare Entitaet + molecular entity + + + + + molecular entity + IUPAC + + + + + + entidad molecular + IUPAC + + + + + entidades moleculares + IUPAC + + + + + entite moleculaire + IUPAC + + + + + molecular entities + IUPAC + + + + + molekulare Entitaet + ChEBI + + + + + + + + + A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. + chemical entity + chemical entity + + + + + chemical entity + UniProt + + + + + + + + + + A role played by the molecular entity or part thereof within a biological context. + biological function + biological role + + + + + biological function + ChEBI + + + + + + + + + + + + + + + A defined linked collection of atoms or a single atom within a molecular entity. + group + Gruppe + Rest + groupe + grupo + grupos + group + + + + + group + IUPAC + + + + + + Gruppe + ChEBI + + + + + Rest + ChEBI + + + + + groupe + IUPAC + + + + + grupo + IUPAC + + + + + grupos + IUPAC + + + + + + + + + + + + + + + + + Hydroxides are chemical compounds containing a hydroxy group or salts containing hydroxide (OH(-)). + hydroxides + + + + + + + + + + + + + + + A compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons). + oxoacid + oxoacids + oxacids + oxiacids + oxo acid + oxy-acids + oxyacids + oxoacid + + + + + oxoacid + IUPAC + + + + + + oxoacids + IUPAC + + + + + + oxacids + ChEBI + + + + + oxiacids + ChEBI + + + + + oxo acid + ChEBI + + + + + oxy-acids + ChEBI + + + + + oxyacids + ChEBI + + + + + + + + + + inorganic anions + inorganic anion + + + + + inorganic anions + ChEBI + + + + + + + + + A molecular entity that contains no carbon. + anorganische Verbindungen + inorganic compounds + inorganic entity + inorganic molecular entities + inorganics + inorganic molecular entity + + + + + anorganische Verbindungen + ChEBI + + + + + inorganic compounds + ChEBI + + + + + inorganic entity + ChEBI + + + + + inorganic molecular entities + ChEBI + + + + + inorganics + ChEBI + + + + + + + + + A molecular entity having a net electric charge. + Ion + ion + Ionen + iones + ions + ion + + + + + Ion + ChEBI + + + + + ion + ChEBI + + + + + ion + IUPAC + + + + + + Ionen + ChEBI + + + + + iones + ChEBI + + + + + ions + ChEBI + + + + + + + + + Any intermediate or product resulting from metabolism. The term 'metabolite' subsumes the classes commonly known as primary and secondary metabolites. + metabolite + metabolites + primary metabolites + secondary metabolites + metabolite + + + + + metabolite + IUPAC + + + + + + metabolites + ChEBI + + + + + primary metabolites + ChEBI + + + + + secondary metabolites + ChEBI + + + + + + + + + nonmetal + Nichtmetall + Nichtmetalle + no metal + no metales + non-metal + non-metaux + nonmetal + nonmetals + nonmetal atom + + + + + nonmetal + IUPAC + + + + + + Nichtmetall + ChEBI + + + + + Nichtmetalle + ChEBI + + + + + no metal + ChEBI + + + + + no metales + ChEBI + + + + + non-metal + ChEBI + + + + + non-metaux + ChEBI + + + + + nonmetal + ChEBI + + + + + nonmetals + ChEBI + + + + + + + + + + An oxide is a chemical compound of oxygen with other chemical elements. + oxide + oxides + oxide + + + + + oxide + ChEBI + + + + + oxides + ChEBI + + + + + + + + + + + + + + + + oxygen + 8O + O + Sauerstoff + oxigeno + oxygen + oxygene + oxygen atom + + + + + oxygen + IUPAC + + + + + + 8O + IUPAC + + + + + O + IUPAC + + + + + Sauerstoff + ChEBI + + + + + oxigeno + ChEBI + + + + + oxygen + ChEBI + + + + + oxygene + ChEBI + + + + + + + + + + + + + + + oxygen molecular entity + oxygen molecular entities + oxygen molecular entity + + + + + oxygen molecular entity + ChEBI + + + + + oxygen molecular entities + ChEBI + + + + + + + + + Salts and esters of phosphoric and oligophosphoric acids and their chalcogen analogues. In inorganic chemistry, the term is also used to describe anionic coordination entities with phosphorus as central atom. + phosphates + phosphates + phosphate + + + + + phosphates + IUPAC + + + + + + phosphates + ChEBI + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A phosphorus oxoacid that consists of one oxo and three hydroxy groups joined covalently to a central phosphorus atom. + Phosphoric acid + phosphoric acid + tetraoxophosphoric acid + trihydrogen tetraoxophosphate(3-) + trihydroxidooxidophosphorus + H3PO4 + Orthophosphoric acid + Phosphate + Phosphorsaeure + Phosphorsaeureloesungen + [PO(OH)3] + acide phosphorique + acidum phosphoricum + orthophosphoric acid + phosphoric acid + + + + + Phosphoric acid + KEGG_COMPOUND + + + + + phosphoric acid + IUPAC + + + + + tetraoxophosphoric acid + IUPAC + + + + + + trihydrogen tetraoxophosphate(3-) + IUPAC + + + + + + trihydroxidooxidophosphorus + IUPAC + + + + + + H3PO4 + IUPAC + + + + + Orthophosphoric acid + KEGG_COMPOUND + + + + + Phosphate + KEGG_COMPOUND + + + + + Phosphorsaeure + ChEBI + + + + + Phosphorsaeureloesungen + ChEBI + + + + + [PO(OH)3] + IUPAC + + + + + acide phosphorique + ChEBI + + + + + acidum phosphoricum + ChEBI + + + + + orthophosphoric acid + NIST_Chemistry_WebBook + + + + + + + + + + + + + + + phosphoric acid derivative + + + + + + + + + + + + + + + phosphorus molecular entities + phosphorus molecular entity + + + + + phosphorus molecular entities + ChEBI + + + + + + + + + + + + + + + + carbon + 6C + C + Carbon + Kohlenstoff + carbon + carbone + carbonium + carbono + carbon atom + + + + + carbon + IUPAC + + + + + + 6C + IUPAC + + + + + C + IUPAC + + + + + C + KEGG_COMPOUND + + + + + Carbon + KEGG_COMPOUND + + + + + Kohlenstoff + ChEBI + + + + + carbon + ChEBI + + + + + carbone + ChEBI + + + + + carbonium + ChEBI + + + + + carbono + ChEBI + + + + + + + + + + + + + + + + phosphorus + 15P + P + Phosphor + Phosphorus + fosforo + phosphore + phosphorus + phosphorus atom + + + + + phosphorus + IUPAC + + + + + + 15P + IUPAC + + + + + P + IUPAC + + + + + P + KEGG_COMPOUND + + + + + Phosphor + ChEBI + + + + + Phosphorus + KEGG_COMPOUND + + + + + fosforo + ChEBI + + + + + phosphore + ChEBI + + + + + phosphorus + ChEBI + + + + + + + + + + Intended use of the molecular entity or part thereof by humans. + application + + + + + + + + + A particle not known to have substructure. + elementary particle + elementary particles + fundamental particle + + + + + elementary particle + IUPAC + + + + + + elementary particles + ChEBI + + + + + + + + + + + + + + + oxoacid derivatives + oxoacid derivative + + + + + oxoacid derivatives + ChEBI + + + + + + + + + Any substituent group which does not contain carbon. + inorganic groups + inorganic group + + + + + inorganic groups + ChEBI + + + + + + + + + + + + + + + + + + + + + A chemical entity constituting the smallest component of an element having the chemical properties of the element. + atom + atome + atomo + atoms + atomus + element + elements + atom + + + + + atom + IUPAC + + + + + + atome + IUPAC + + + + + atomo + IUPAC + + + + + atoms + ChEBI + + + + + atomus + ChEBI + + + + + element + ChEBI + + + + + elements + ChEBI + + + + + + + + + + + + + + + A nucleus is the positively charged central portion of an atom, excluding the orbital electrons. + nucleus + Atomkern + Kern + noyau + noyau atomique + nuclei + nucleo + nucleo atomico + nucleus atomi + atomic nucleus + + + + + nucleus + IUPAC + + + + + + Atomkern + ChEBI + + + + + Kern + ChEBI + + + + + noyau + IUPAC + + + + + noyau atomique + ChEBI + + + + + nuclei + ChEBI + + + + + nucleo + IUPAC + + + + + nucleo atomico + ChEBI + + + + + nucleus atomi + ChEBI + + + + + + + + + + Heavy nuclear particle: proton or neutron. + nucleon + Nukleon + Nukleonen + nucleons + nucleon + + + + + nucleon + IUPAC + + + + + nucleon + IUPAC + + + + + + Nukleon + ChEBI + + + + + Nukleonen + ChEBI + + + + + nucleons + ChEBI + + + + + + + + + + An anion consisting of more than one atom. + polyatomic anions + polyatomic anion + + + + + polyatomic anions + ChEBI + + + + + + + + + A nutrient is a food component that an organism uses to survive and grow. + nutrients + nutrient + + + + + nutrients + ChEBI + + + + + + + + + An agrochemical is a substance that is used in agriculture or horticulture. + agrichemical + agrichemicals + agricultural chemicals + agrochemicals + agrochemical + + + + + agrichemical + ChEBI + + + + + agrichemicals + ChEBI + + + + + agricultural chemicals + ChEBI + + + + + agrochemicals + ChEBI + + + + + + + + + A fertilizer is any substance that is added to soil or water to assist the growth of plants. + fertiliser + fertilizers + fertilizer + + + + + fertiliser + ChEBI + + + + + fertilizers + ChEBI + + + + + + + + + Any p-block element atom that is in group 15 of the periodic table: nitrogen, phosphorus, arsenic, antimony and bismuth. + pnictogens + group 15 elements + group V elements + nitrogenoideos + nitrogenoides + pnictogene + pnictogenes + pnictogen + + + + + pnictogens + IUPAC + + + + + + group 15 elements + ChEBI + + + + + group V elements + ChEBI + + + + + nitrogenoideos + ChEBI + + + + + nitrogenoides + ChEBI + + + + + pnictogene + ChEBI + + + + + pnictogenes + ChEBI + + + + + + + + + + + + + + + A p-block molecular entity containing any pnictogen. + pnictogen molecular entity + pnictogen molecular entities + pnictogen molecular entity + + + + + pnictogen molecular entity + ChEBI + + + + + pnictogen molecular entities + ChEBI + + + + + + + + + Any p-block element belonging to the group 16 family of the periodic table. + chalcogen + chalcogens + Chalkogen + Chalkogene + anfigeno + anfigenos + calcogeno + calcogenos + chalcogene + chalcogenes + group 16 elements + group VI elements + chalcogen + + + + + chalcogen + IUPAC + + + + + + chalcogens + IUPAC + + + + + + Chalkogen + ChEBI + + + + + Chalkogene + ChEBI + + + + + anfigeno + ChEBI + + + + + anfigenos + ChEBI + + + + + calcogeno + ChEBI + + + + + calcogenos + ChEBI + + + + + chalcogene + ChEBI + + + + + chalcogenes + ChEBI + + + + + group 16 elements + ChEBI + + + + + group VI elements + ChEBI + + + + + + + + + + + + + + + Any p-block molecular entity containing a chalcogen. + chalcogen molecular entity + chalcogen compounds + chalcogen molecular entities + chalcogen molecular entity + + + + + chalcogen molecular entity + ChEBI + + + + + chalcogen compounds + ChEBI + + + + + chalcogen molecular entities + ChEBI + + + + + + + + + group 14 elements + carbon group element + carbon group elements + carbonoides + cristallogene + cristallogenes + group IV elements + carbon group element atom + + + + + group 14 elements + IUPAC + + + + + + carbon group element + ChEBI + + + + + carbon group elements + ChEBI + + + + + carbonoides + ChEBI + + + + + cristallogene + ChEBI + + + + + cristallogenes + ChEBI + + + + + group IV elements + ChEBI + + + + + + + + + An atom belonging to one of the main groups (found in the s- and p- blocks) of the periodic table. + main group elements + Hauptgruppenelement + Hauptgruppenelemente + main group element + main group element atom + + + + + main group elements + IUPAC + + + + + + Hauptgruppenelement + ChEBI + + + + + Hauptgruppenelemente + ChEBI + + + + + main group element + ChEBI + + + + + + + + + + + + + + + + pnictogen oxoacids + pnictogen oxoacid + + + + + pnictogen oxoacids + ChEBI + + + + + + + + + + A pnictogen oxoacid which contains phosphorus and oxygen, at least one hydrogen atom bound to oxygen, and forms an ion by the loss of one or more protons. + phosphorus oxoacid + Oxosaeure des Phosphors + oxoacids of phosphorus + phosphorus oxoacids + phosphorus oxoacid + + + + + phosphorus oxoacid + ChEBI + + + + + Oxosaeure des Phosphors + ChEBI + + + + + oxoacids of phosphorus + ChEBI + + + + + phosphorus oxoacids + ChEBI + + + + + + + + + + pnictogen oxoanion + pnictogen oxoanions + pnictogen oxoanion + + + + + pnictogen oxoanion + ChEBI + + + + + pnictogen oxoanions + ChEBI + + + + + + + + + + + phosphorus oxoanion + oxoanions of phosphorus + phosphorus oxoanions + phosphorus oxoanion + + + + + phosphorus oxoanion + ChEBI + + + + + oxoanions of phosphorus + ChEBI + + + + + phosphorus oxoanions + ChEBI + + + + + + + + + s-block element + s-block elements + s-block element atom + + + + + s-block element + ChEBI + + + + + s-block elements + ChEBI + + + + + + + + + Any main group element atom belonging to the p-block of the periodic table. + p-block element + p-block elements + p-block element atom + + + + + p-block element + ChEBI + + + + + p-block elements + ChEBI + + + + + + + + + + + + + + + A molecular entity containing one or more atoms from any of groups 1, 2, 13, 14, 15, 16, 17, and 18 of the periodic table. + main group compounds + main group molecular entities + main group molecular entity + + + + + main group compounds + ChEBI + + + + + main group molecular entities + ChEBI + + + + + + + + + + + + + + + carbon group molecular entity + carbon group molecular entities + carbon group molecular entity + + + + + carbon group molecular entity + ChEBI + + + + + carbon group molecular entities + ChEBI + + + + + + + + + + + + + + + hydrogen compounds + hydrogen molecular entities + hydrogen molecular entity + + + + + hydrogen compounds + ChEBI + + + + + hydrogen molecular entities + ChEBI + + + + + + + + + + + + + + + An s-block molecular entity is a molecular entity containing one or more atoms of an s-block element. + s-block molecular entity + s-block compounds + s-block molecular entities + s-block molecular entity + + + + + s-block molecular entity + ChEBI + + + + + s-block compounds + ChEBI + + + + + s-block molecular entities + ChEBI + + + + + + + + + + + + + + + A main group molecular entity that contains one or more atoms of a p-block element. + p-block compounds + p-block molecular entities + p-block molecular entitiy + p-block molecular entity + + + + + p-block compounds + ChEBI + + + + + p-block molecular entities + ChEBI + + + + + p-block molecular entitiy + ChEBI + + + + + + + + + Any nutrient required in large quantities by organisms throughout their life in order to orchestrate a range of physiological functions. Macronutrients are usually chemical elements (carbon, hydrogen, nitrogen, oxygen, phosphorus and sulfur) that humans consume in the largest quantities. Calcium, sodium, magnesium and potassium are sometimes included as macronutrients because they are required in relatively large quantities compared with other vitamins and minerals. + macronutrients + macronutrient + + + + + macronutrients + ChEBI + + + + + + + + + + An oxoanion is an anion derived from an oxoacid by loss of hydron(s) bound to oxygen. + oxoanion + oxoacid anions + oxoanions + oxoanion + + + + + oxoanion + ChEBI + + + + + oxoacid anions + ChEBI + + + + + oxoanions + ChEBI + + + + + + + + + + + + + + + + + + + + + A phosphorus oxoanion that is the conjugate base of phosphoric acid. + Pi + phosphate + phosphate ions + phosphate ion + + + + + Pi + ChEBI + + + + + phosphate + ChEBI + + + + + phosphate ions + ChEBI + + + + + + + + + + Lepton is a fermion that does not experience the strong force (strong interaction). The term is derived from the Greek lambdaepsilonpitauomicronsigma (small, thin). + leptons + lepton + + + + + leptons + ChEBI + + + + + + + + + + Baryon is a fermion that does experience the strong force (strong interaction). The term is derived from the Greek betaalpharhoupsilonsigma (heavy). + baryons + baryon + + + + + baryons + ChEBI + + + + + + + + + Particle of half-integer spin quantum number following Fermi-Dirac statistics. Fermions are named after Enrico Fermi. + fermion + fermions + fermion + + + + + fermion + IUPAC + + + + + + fermions + ChEBI + + + + + + + + A particle smaller than an atom. + subatomic particles + subatomic particle + + + + + subatomic particles + ChEBI + + + + + + + + + A subatomic particle known to have substructure (i.e. consisting of smaller particles). + composite particles + composite particle + + + + + composite particles + ChEBI + + + + + + + + + Hadron is a subatomic particle which experiences the strong force. + hadrons + hadron + + + + + hadrons + ChEBI + + + + + + + + + A nucleus or any of its constituents in any of their energy states. + nuclear particle + nuclear particle + + + + + nuclear particle + IUPAC + + + + + + + + + + + + + + + + Any molecular entity consisting of more than one atom. + polyatomic entities + polyatomic entity + + + + + polyatomic entities + ChEBI + + + + + + + + + + An ion consisting of more than one atom. + polyatomic ions + polyatomic ion + + + + + polyatomic ions + ChEBI + + + + + + + + + + + + + + + + phosphorus oxoacid derivative + phosphorus oxoacid derivative + + + + + phosphorus oxoacid derivative + ChEBI + + + + + + + + + phosphorus oxoacids and derivatives + + + + + + + + + + inorganic ions + inorganic ion + + + + + inorganic ions + ChEBI + + + + + + + + + An acid is a molecular entity capable of donating a hydron (Bronsted acid) or capable of forming a covalent bond with an electron pair (Lewis acid). + Acid + acid + Saeure + Saeuren + acide + acido + acids + acid + + + + + Acid + KEGG_COMPOUND + + + + + acid + IUPAC + + + + + + Saeure + ChEBI + + + + + Saeuren + ChEBI + + + + + acide + IUPAC + + + + + acido + ChEBI + + + + + acids + ChEBI + + + + + + + + + A molecular entity consisting of two or more chemical elements. + chemical compound + heteroatomic molecular entities + heteroatomic molecular entity + + + + + chemical compound + ChEBI + + + + + heteroatomic molecular entities + ChEBI + + + + + + + + + + A molecular entity capable of donating a hydron to an acceptor (Bronsted base). + Bronsted acid + Bronsted-Saeure + acide de Bronsted + donneur d'hydron + hydron donor + Bronsted acid + + + + + Bronsted acid + IUPAC + + + + + + Bronsted-Saeure + ChEBI + + + + + acide de Bronsted + IUPAC + + + + + donneur d'hydron + IUPAC + + + + + hydron donor + IUPAC + + + + + + + + + + + + + + + + A monovalent inorganic anion that consists of phosphoric acid in which one of the three OH groups has been deprotonated. + dihydrogen(tetraoxidophosphate)(1-) + dihydrogenphosphate + dihydrogentetraoxophosphate(1-) + dihydrogentetraoxophosphate(V) + dihydroxidodioxidophosphate(1-) + DIHYDROGENPHOSPHATE ION + H2PO4(-) + [PO2(OH)2](-) + dihydrogenphosphate + + + + + dihydrogen(tetraoxidophosphate)(1-) + IUPAC + + + + + + dihydrogenphosphate + IUPAC + + + + + + dihydrogentetraoxophosphate(1-) + IUPAC + + + + + + dihydrogentetraoxophosphate(V) + IUPAC + + + + + + dihydroxidodioxidophosphate(1-) + IUPAC + + + + + + DIHYDROGENPHOSPHATE ION + PDBeChem + + + + + H2PO4(-) + IUPAC + + + + + [PO2(OH)2](-) + IUPAC + + + + + + + + + HYDROXY GROUP + hydroxy + hydroxy group + -OH + hydroxyl + hydroxyl group + hydroxy group + + + + + HYDROXY GROUP + PDBeChem + + + + + hydroxy + IUPAC + + + + + + hydroxy group + UniProt + + + + + -OH + IUPAC + + + + + hydroxyl + ChEBI + + + + + hydroxyl group + ChEBI + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A phosphate ion that is the conjugate base of dihydrogenphosphate. + hydrogen(tetraoxidophosphate)(2-) + hydrogenphosphate + hydrogentetraoxophosphate(2-) + hydrogentetraoxophosphate(V) + hydroxidotrioxidophosphate(2-) + HPO4(2-) + HYDROGENPHOSPHATE ION + INORGANIC PHOSPHATE GROUP + [P(OH)O3](2-) + [PO3(OH)](2-) + hydrogen phosphate + phosphate + hydrogenphosphate + + + + + hydrogen(tetraoxidophosphate)(2-) + IUPAC + + + + + + hydrogenphosphate + IUPAC + + + + + + hydrogentetraoxophosphate(2-) + IUPAC + + + + + + hydrogentetraoxophosphate(V) + IUPAC + + + + + + hydroxidotrioxidophosphate(2-) + IUPAC + + + + + + HPO4(2-) + IUPAC + + + + + HYDROGENPHOSPHATE ION + PDBeChem + + + + + INORGANIC PHOSPHATE GROUP + PDBeChem + + + + + [P(OH)O3](2-) + MolBase + + + + + [PO3(OH)](2-) + IUPAC + + + + + hydrogen phosphate + ChEBI + + + + + phosphate + UniProt + + + + + + + + + + A liquid that can dissolve other substances (solutes) without any change in their chemical composition. + Loesungsmittel + solvant + solvents + solvent + + + + + Loesungsmittel + ChEBI + + + + + solvant + ChEBI + + + + + solvents + ChEBI + + + + + + + + + + + + + + + + + hydrogen + 1H + H + Wasserstoff + hidrogeno + hydrogen + hydrogene + hydrogen atom + + + + + hydrogen + IUPAC + + + + + + 1H + IUPAC + + + + + H + IUPAC + + + + + Wasserstoff + ChEBI + + + + + hidrogeno + ChEBI + + + + + hydrogen + ChEBI + + + + + hydrogene + ChEBI + + + + + + + + + + + + + + + Any molecular entity that contains carbon. + organic compounds + organic entity + organic molecular entities + organic molecular entity + + + + + organic compounds + ChEBI + + + + + organic entity + ChEBI + + + + + organic molecular entities + ChEBI + + + + + + + + + A role is particular behaviour which a material entity may exhibit. + role + + + + + + + + + + A role played by the molecular entity or part thereof within a chemical context. + chemical role + + + + + + + + + A biological role played by the molecular entity or part thereof within a biochemical context. + biochemical role + + + + + + + + + physiological role + + + + + + + + + Compounds containing one or more phosphoric acid units. + phosphoric acids + + + + + + + + + Any organic molecular entity that is acidic and contains carbon in covalent linkage. + organic acids + organic acid + + + + + organic acids + ChEBI + + + + + + + + + Any metabolite produced during a metabolic reaction in eukaryotes, the taxon that include members of the fungi, plantae and animalia kingdoms. + eukaryotic metabolites + eukaryotic metabolite + + + + + eukaryotic metabolites + ChEBI + + + + + + + + + Any eukaryotic metabolite produced during a metabolic reaction in animals that include diverse creatures from sponges, insects to mammals. + animal metabolites + animal metabolite + + + + + animal metabolites + ChEBI + + + + + + + + + Any animal metabolite produced during a metabolic reaction in mammals. + mammalian metabolites + mammalian metabolite + + + + + mammalian metabolites + ChEBI + + + + + + + + + Any fungal metabolite produced during a metabolic reaction in Baker's yeast (Saccharomyces cerevisiae). + S. cerevisiae metabolite + S. cerevisiae metabolites + S. cerevisiae secondary metabolite + S. cerevisiae secondary metabolites + Saccharomyces cerevisiae metabolites + Saccharomyces cerevisiae secondary metabolites + baker's yeast metabolite + baker's yeast metabolites + baker's yeast secondary metabolite + baker's yeast secondary metabolites + Saccharomyces cerevisiae metabolite + + + + + S. cerevisiae metabolite + ChEBI + + + + + S. cerevisiae metabolites + ChEBI + + + + + S. cerevisiae secondary metabolite + ChEBI + + + + + S. cerevisiae secondary metabolites + ChEBI + + + + + Saccharomyces cerevisiae metabolites + ChEBI + + + + + Saccharomyces cerevisiae secondary metabolites + ChEBI + + + + + baker's yeast metabolite + ChEBI + + + + + baker's yeast metabolites + ChEBI + + + + + baker's yeast secondary metabolite + ChEBI + + + + + baker's yeast secondary metabolites + ChEBI + + + + + + + + + Any eukaryotic metabolite produced during a metabolic reaction in fungi, the kingdom that includes microorganisms such as the yeasts and moulds. + fungal metabolites + fungal metabolite + + + + + fungal metabolites + ChEBI + + + + + + + + + Any mammalian metabolite produced during a metabolic reaction in humans (Homo sapiens). + H. sapiens metabolite + H. sapiens metabolites + Homo sapiens metabolite + Homo sapiens metabolites + human metabolite + + + + + H. sapiens metabolite + ChEBI + + + + + H. sapiens metabolites + ChEBI + + + + + Homo sapiens metabolite + ChEBI + + + + + Homo sapiens metabolites + ChEBI + + + + + + + + + A physiological role played by any substance that is distributed in foodstuffs. It includes materials derived from plants or animals, such as vitamins or minerals, as well as environmental contaminants. + dietary component + dietary components + food components + food component + + + + + dietary component + ChEBI + + + + + dietary components + ChEBI + + + + + food components + ChEBI + + + + + + + + + Any inorganic anion with a valency of three. + trivalent inorganic anions + trivalent inorganic anion + + + + + trivalent inorganic anions + ChEBI + + + + + + + + + Any inorganic anion with a valency of two. + divalent inorganic anions + divalent inorganic anion + + + + + divalent inorganic anions + ChEBI + + + + + + + + + Any inorganic anion with a valency of one. + monovalent inorganic anions + monovalent inorganic anion + + + + + monovalent inorganic anions + ChEBI + + + + + + + + + Any eukaryotic metabolite produced during a metabolic reaction in algae including unicellular organisms like chlorella and diatoms to multicellular organisms like giant kelps and brown algae. + algal metabolites + algal metabolite + + + + + algal metabolites + ChEBI + + + + + + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + molecular function + molecular_function + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + GOC:pdt + + + + + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + enzyme activity + catalytic activity + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + GOC:vw + ISBN:0198506732 + + + + + enzyme activity + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + + The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage. + organic acid metabolism + organic acid metabolic process + + + + + The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage. + ISBN:0198506732 + + + + + - - - molecular_function + + + + + + + + + + + + + + + + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + phosphorus metabolism + phosphorus metabolic process + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + GOC:ai + - + - - - catalytic activity + + + + + + + + + + + + + + + + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + phosphate metabolism + phosphate metabolic process + phosphate-containing compound metabolic process + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + GOC:ai + @@ -1452,18 +5046,91 @@ + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + metabolism + metabolic process resulting in cell growth + metabolism resulting in cell growth + multicellular organism metabolic process + single-organism metabolic process + metabolic process + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + GOC:go_curators + ISBN:0198547684 + + + + + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + cell physiology + cellular physiological process + cell growth and/or maintenance + single-organism cellular process + cellular process + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + GOC:isa_complete + + + + + + + + + + true + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + phosphokinase activity kinase activity + + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + ISBN:0198506732 + + + + + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + phosphorylation + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + ISBN:0198506732 + @@ -1471,8 +5138,15 @@ + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. transferase activity + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + ISBN:0198506732 + @@ -1480,8 +5154,136 @@ + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). transferase activity, transferring phosphorus-containing groups + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + GOC:jl + ISBN:0198506732 + + + + + + + + + + + + + + + + + + + + + + + + + + The chemical reactions and pathways involving any oxoacid; an oxoacid is a compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons). + keto acid metabolic process + keto acid metabolism + ketoacid metabolic process + ketoacid metabolism + oxo acid metabolic process + oxo acid metabolism + oxoacid metabolism + oxoacid metabolic process + + + + + The chemical reactions and pathways involving any oxoacid; an oxoacid is a compound which contains oxygen, at least one other element, and at least one hydrogen bound to oxygen, and which produces a conjugate base by loss of positive hydrogen ion(s) (hydrons). + Wikipedia:Oxyacid + + + + + + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + cellular metabolism + intermediary metabolism + cellular metabolic process + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + GOC:go_curators + + + + + intermediary metabolism + GOC:mah + + + + + + + + + The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule. + small molecule metabolism + small molecule metabolic process + + + + + The chemical reactions and pathways involving small molecules, any low molecular weight, monomeric, non-encoded molecule. + GOC:curators + GOC:pde + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. + organic molecular entity metabolic process + organic molecular entity metabolism + organic substance metabolism + organic substance metabolic process + + + + + The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon. + GOC:mah + @@ -1686,7 +5488,7 @@ - + @@ -1707,6 +5509,22 @@ + + + + + A quality that exists by virtue of being a particular point in the time of a cycle. + phase + + + + + A quality that exists by virtue of being a particular point in the time of a cycle. + PATOC:GVG + + + + @@ -2303,7 +6121,6 @@ - A quality which inheres in a continuant. monadic quality of a continuant @@ -2645,7 +6462,7 @@ - + @@ -3099,12 +6916,6 @@ - - - - - -