From 32d9469273c8ab3e75f910cdf53fafcbfe9095f5 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Fri, 15 Oct 2021 15:00:21 -0400 Subject: [PATCH 01/22] Update .travis.yml --- .travis.yml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/.travis.yml b/.travis.yml index 39be6e8..a707165 100644 --- a/.travis.yml +++ b/.travis.yml @@ -24,6 +24,4 @@ branches: notifications: email: - - pbuttigi@mpi-bremen.de - - m.a.laporte@cgiar.org - - c.aubert@cgiar.org + - krishna.udaiwal@gmail.com From d90a20cf01393044b8dd97da4b33dde35fb6f493 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 14:49:49 -0400 Subject: [PATCH 02/22] modify definition per issue #100 --- src/ontology/agro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..b05f3a8 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4395,7 +4395,7 @@ SubClassOf( (number of square meter harvested) -AnnotationAssertion( "Number of different crop used in an experiment."@en) +AnnotationAssertion( "Number of square meters harvested in an experiment."@en) AnnotationAssertion( ) AnnotationAssertion( "number of m2 harvested"@en) AnnotationAssertion( "number of m2 units harvested"@en) From f5dfb884d1946bcc513fa7773a56020e405348f6 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 15:03:21 -0400 Subject: [PATCH 03/22] Revise annotation for issue #101 Change dc:description to IAO_0000115 --- src/ontology/agro-edit.owl | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..37b9936 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4293,9 +4293,8 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (ridge height) -AnnotationAssertion( "Distance between the top and the bottom of a pot."@en) +AnnotationAssertion( "A height entity that inheres in some ridge."@en) AnnotationAssertion( ) -AnnotationAssertion( "A height entity that inheres in some ridge."@en) AnnotationAssertion(rdfs:label "ridge height"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) From e4a683fb39eaa2cd78c4bf6a5b3aeea99cace16c Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 15:10:25 -0400 Subject: [PATCH 04/22] revised def per issue #102 --- src/ontology/agro-edit.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..09b00ec 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -1802,7 +1802,7 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (hand sprayer) -AnnotationAssertion(Annotation( "https://www.google.com/patents/US8420070") "An implement that is used to spray liquid and is help in the hand. It usually has an air pump which compresses air into the tanks and pressurizes the liquid to spray. "@en) +AnnotationAssertion(Annotation( "https://www.google.com/patents/US8420070") "An implement that is used to spray liquid and is held in the hand. It usually has an air pump which compresses air into the tanks and pressurizes the liquid to spray. "@en) AnnotationAssertion( "https://orcid.org/0000-0001-6284-4821"@en) AnnotationAssertion(rdfs:label "hand sprayer"@en) SubClassOf( ) @@ -4246,7 +4246,7 @@ SubClassOf( (boom sprayer) -AnnotationAssertion(Annotation( "https://www.google.com/patents/US8420070") "An implement that is used to spray liquid and is help in the hand. It usually has an air pump which compresses air into the tanks and pressurizes the liquid to spray. "@en) +AnnotationAssertion(Annotation( "https://www.google.com/patents/US8420070") "An implement that is used to spray liquid. It usually has an air pump which compresses air into the tanks and pressurizes the liquid to spray. "@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "boom sprayer"@en) SubClassOf( ) From f2451fe15982d035b336f6f2f05296ab0dfcb734 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 15:51:14 -0400 Subject: [PATCH 05/22] Revise annotation for issue #103 --- src/ontology/agro-edit.owl | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..b719c41 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4283,9 +4283,8 @@ SubClassOf( (ridge width) -AnnotationAssertion( "A width entity that inheres in some row."@en) +AnnotationAssertion( "A width entity that inheres in some ridge."@en) AnnotationAssertion( ) -AnnotationAssertion( "A width entity that inheres in some ridge."@en) AnnotationAssertion(rdfs:label "ridge width"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) From 3e973b4e899d3bc835046e77311e0255b0468e2f Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:05:40 -0400 Subject: [PATCH 06/22] Revise ontology annotation per issue #104 Changed rdfs:comment to dc:description, as per ROBOT report --- src/ontology/agro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..a099aa0 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -36,9 +36,9 @@ Annotation( "Céline Aubert") Annotation( "Marié-Angélique Laporte") Annotation( "Pier Luigi Buttigieg") +Annotation( "AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities"@en) Annotation( "Agronomy Ontology"@en) Annotation( ) -Annotation(rdfs:comment "AgrO is an ontlogy for representing agronomic practices, techniques, variables and related entities"@en) Annotation(rdfs:comment "The Agronomy Ontology by CGIAR is licensed under CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/)."@en) Declaration(Class()) From 196ec9dcbd4dbd84383ded875674b6456f9424c2 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:17:16 -0400 Subject: [PATCH 07/22] Revise def per issue #105 --- src/ontology/agro-edit.owl | 1 - 1 file changed, 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..dd6612f 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -2806,7 +2806,6 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (distance between plants) -AnnotationAssertion( "Distance between two rows."@en) AnnotationAssertion( "space between plants"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) From b5d15fb6729d07368ccdc448e9d0bba012ad824a Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:23:30 -0400 Subject: [PATCH 08/22] Revised def per issue #106 --- src/ontology/agro-edit.owl | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..96a786f 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -2806,7 +2806,6 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (distance between plants) -AnnotationAssertion( "Distance between two rows."@en) AnnotationAssertion( "space between plants"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -2820,7 +2819,6 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (distance between rows) -AnnotationAssertion( "Average distance between plants in a same row."@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) From 7124d9111c0ddc60925bf3adeda6bdfd875bf3ab Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:25:43 -0400 Subject: [PATCH 09/22] Remove duplicate annotation def per issue #107 --- src/ontology/patterns/eq.owl | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/src/ontology/patterns/eq.owl b/src/ontology/patterns/eq.owl index 9bda54c..16b191d 100644 --- a/src/ontology/patterns/eq.owl +++ b/src/ontology/patterns/eq.owl @@ -516,7 +516,7 @@ - The distance of a row + The distance between two rows. distance between rows @@ -646,7 +646,6 @@ - The area density of a crop residue crop residue area density @@ -4005,5 +4004,5 @@ - + From ad9a69cd48daed66da2826186299cc986a8126d4 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:27:52 -0400 Subject: [PATCH 10/22] remove duplicate annotation label per issue #108 --- src/ontology/patterns/eq.owl | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/ontology/patterns/eq.owl b/src/ontology/patterns/eq.owl index 9bda54c..a988d9e 100644 --- a/src/ontology/patterns/eq.owl +++ b/src/ontology/patterns/eq.owl @@ -647,7 +647,6 @@ The area density of a crop residue - crop residue area density @@ -4005,5 +4004,5 @@ - + From 1b9c0cbb6278dae2d81608ad08ef93f3b2215efb Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:35:56 -0400 Subject: [PATCH 11/22] merged equivalent statements per issue #109 --- src/ontology/agro-edit.owl | 1 - src/ontology/patterns/eq.owl | 18 +++++++++++++++++- 2 files changed, 17 insertions(+), 2 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..de09f24 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -1990,7 +1990,6 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (mulch color) -EquivalentClasses( ObjectSomeValuesFrom( )) SubClassOf( ) # Class: (bund) diff --git a/src/ontology/patterns/eq.owl b/src/ontology/patterns/eq.owl index 9bda54c..83cbcd1 100644 --- a/src/ontology/patterns/eq.owl +++ b/src/ontology/patterns/eq.owl @@ -39,6 +39,12 @@ + + + + + + @@ -315,6 +321,10 @@ + + + + @@ -462,6 +472,12 @@ + + + + + + @@ -4005,5 +4021,5 @@ - + From 1609f3b1dc191cc89f5e2cd9bf128523124f5c2d Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:38:49 -0400 Subject: [PATCH 12/22] Merged equivalent statements per issue #110 --- src/ontology/agro-edit.owl | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..ea7f796 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -5244,8 +5244,7 @@ SubClassOf( "A planned process which occurs during an agricultural experiment.") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "agricultural process"@en) -EquivalentClasses( ObjectSomeValuesFrom( )) -EquivalentClasses( ObjectSomeValuesFrom( )) +EquivalentClasses( ObjectUnionOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) From a95a3ece7a5368353ec62bee8cbdee8c93623673 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:40:11 -0400 Subject: [PATCH 13/22] type per issue #111 --- src/ontology/agro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..7f46c9f 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -750,7 +750,7 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (irrigation process) AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Irrigation -") Annotation( "www.dictionary.com/browse/irrigation") "A planned process in which water is artificially supplied to plant or soil to sustain plants. "@en) +") Annotation( "www.dictionary.com/browse/irrigation") "A planned process in which water is artificially supplied to plant or soil to sustain plants."@en) AnnotationAssertion( "irrigation"@en) AnnotationAssertion(rdfs:label "irrigation process"@en) SubClassOf( ) From cba9c43b7ebb8d7c95c663806863984fba7cb189 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 16:42:38 -0400 Subject: [PATCH 14/22] Revised annotation per issue #112 --- src/ontology/agro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..730edec 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -5641,7 +5641,7 @@ AnnotationAssertion( "organic fertilizer area density"@en) AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) AnnotationAssertion( "number of weeding interventions") -AnnotationAssertion( "total number of land levelling passes"@en) +AnnotationAssertion( "total number of puddling passes"@en) AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) AnnotationAssertion( "pruning date"@en) AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) From aaea791433f645c971b82c52d102160fc0684e02 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 21:33:27 -0400 Subject: [PATCH 15/22] Revised or added def annotations per issue #113 Changed dc:description to IAO_0000115 Added IAO_0000115 where definition missing --- src/ontology/agro-edit.owl | 117 ++++++++++++++++++++++--------------- 1 file changed, 70 insertions(+), 47 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 392919e..eb0fb96 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -1503,8 +1503,8 @@ SubClassOf( (mechanical pest removal process) +AnnotationAssertion( "A mechanical pest control process in which pests are removed without being killed."@en) AnnotationAssertion( "https://orcid.org/0000-0001-6284-4821"@en) -AnnotationAssertion( "A mechanical pest control process in which pests are removed without being killed."@en) AnnotationAssertion( "removal technique"@en) AnnotationAssertion(rdfs:label "mechanical pest removal process"@en) SubClassOf( ) @@ -1838,7 +1838,7 @@ SubClassOf( (crop residue) -AnnotationAssertion(Annotation( "https://stats.oecd.org/glossary/detail.asp?ID=480") "Plant material remaining on the field ground after harvesting, including leaves, stalks, roots."@en) +AnnotationAssertion(Annotation( "https://stats.oecd.org/glossary/detail.asp?ID=480") "Plant material remaining on the field ground after harvesting, including leaves, stalks, roots."@en) AnnotationAssertion( "crop residue description"@en) AnnotationAssertion(rdfs:label "crop residue"@en) EquivalentClasses( ObjectSomeValuesFrom( )) @@ -2536,7 +2536,7 @@ SubClassOf( (weight loss on ignition method) -AnnotationAssertion(Annotation( "http://nofc.cfs.nrcan.gc.ca/bookstore_pdfs/21222.pdf") Annotation( "http://www.agvise.com/educational-articles/soil-organic-matter-a-choice-of-methods/") Annotation( "http://www2.hawaii.edu/~rsyost/Konare_etal_LOI2010.pdf") "Protocol used to measure soil organic matter and soil organic carbon. The method is based upon measuring the weight loss from a dry soil sample when exposed to high temperatures (between 350°C and 600°C). The weight loss that occurs at this temperature is then correlated to oxidizable organic carbon."@en) +AnnotationAssertion(Annotation( "http://nofc.cfs.nrcan.gc.ca/bookstore_pdfs/21222.pdf") Annotation( "http://www.agvise.com/educational-articles/soil-organic-matter-a-choice-of-methods/") Annotation( "http://www2.hawaii.edu/~rsyost/Konare_etal_LOI2010.pdf") "Protocol used to measure soil organic matter and soil organic carbon. The method is based upon measuring the weight loss from a dry soil sample when exposed to high temperatures (between 350°C and 600°C). The weight loss that occurs at this temperature is then correlated to oxidizable organic carbon."@en) AnnotationAssertion( "LOI method"@en) AnnotationAssertion(rdfs:label "weight loss on ignition method"@en) SubClassOf( ) @@ -3458,8 +3458,8 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (agricultural implement) +AnnotationAssertion( "An object used to perform an agricultural process."@en) AnnotationAssertion( "https://orcid.org/0000-0001-6284-4821"@en) -AnnotationAssertion( "An object used to perform an agricultural process."@en) AnnotationAssertion(rdfs:label "agricultural implement"@en) SubClassOf( ) @@ -3477,7 +3477,7 @@ SubClassOf( (soil profile altitude) -AnnotationAssertion( "Elevation above the sea level of the soil profile."@en) +AnnotationAssertion( "Elevation above the sea level of the soil profile."@en) AnnotationAssertion(rdfs:label "soil profile altitude"@en) SubClassOf( ) @@ -3773,7 +3773,11 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (agricultural product storage process) AnnotationAssertion( "A planned process in which the harvest is stored."@en) +<<<<<<< Updated upstream AnnotationAssertion(rdfs:label "agricultural product storage process"@en) +======= +AnnotationAssertion(rdfs:label "storage process"@en) +>>>>>>> Stashed changes SubClassOf( ) # Class: (cutting process) @@ -3814,7 +3818,7 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (tedder) -AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Tedder_(machine)") "An agricultural implement that uses moving forks to aerate or \"wuffle\" the hay and thus speed up the process of hay-making. It is used after cutting and before windrowing."@en) +AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Tedder_(machine)") "An agricultural implement that uses moving forks to aerate or \"wuffle\" the hay and thus speed up the process of hay-making. It is used after cutting and before windrowing."@en) AnnotationAssertion( "hay tedder"@en) AnnotationAssertion(rdfs:label "tedder"@en) SubClassOf( ) @@ -3822,7 +3826,7 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (combine harvester) -AnnotationAssertion(Annotation( "Richard Ostler") "An harvest implement that reaps, threshes, and cleans a crop in one operation."@en) +AnnotationAssertion(Annotation( "Richard Ostler") "An harvest implement that reaps, threshes, and cleans a crop in one operation."@en) AnnotationAssertion(rdfs:label "combine harvester"@en) SubClassOf( ) @@ -3951,96 +3955,96 @@ SubClassOf( (seed per meter square) +AnnotationAssertion( "An area density unit which is equal to the number of seeds per meters squared."@en) AnnotationAssertion( "https://orcid.org/0000-0001-6284-4821"@en) -AnnotationAssertion( "An area density unit which is equal to the number of seeds per meters squared."@en) AnnotationAssertion( "seed/m2"@en) AnnotationAssertion(rdfs:label "seed per meter square"@en) SubClassOf( ) # Class: (seed per acre) +AnnotationAssertion( "An area density unit which is equal to the number of seeds per acre."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of seeds per acre."@en) AnnotationAssertion( "seed/ac"@en) AnnotationAssertion(rdfs:label "seed per acre"@en) SubClassOf( ) # Class: (row per plot) +AnnotationAssertion( "An area density unit which is equal to the number of rows per plot."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of rows per plot."@en) AnnotationAssertion( "row/plot"@en) AnnotationAssertion(rdfs:label "row per plot"@en) SubClassOf( ) # Class: (row per meter square) +AnnotationAssertion( "An area density unit which is equal to the number of rows per meters squared."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of rows per meters squared."@en) AnnotationAssertion( "row/m2"@en) AnnotationAssertion(rdfs:label "row per meter square"@en) SubClassOf( ) # Class: (row per foot square) +AnnotationAssertion( "An area density unit which is equal to the number of rows per feet squared."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of rows per feet squared."@en) AnnotationAssertion( "row/ft2"@en) AnnotationAssertion(rdfs:label "row per foot square"@en) SubClassOf( ) # Class: (row per acre) +AnnotationAssertion( "An area density unit which is equal to the number of rows per acre."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of rows per acre."@en) AnnotationAssertion( "row/ac"@en) AnnotationAssertion(rdfs:label "row per acre"@en) SubClassOf( ) # Class: (row per hectare) +AnnotationAssertion( "An area density unit which is equal to the number of rows per hectare."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of rows per hectare."@en) AnnotationAssertion( "row/ha"@en) AnnotationAssertion(rdfs:label "row per hectare"@en) SubClassOf( ) # Class: (plants per hill) +AnnotationAssertion( "An area density unit which is equal to the number of plants per hill."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of plants per hill."@en) AnnotationAssertion( "plants/hill"@en) AnnotationAssertion(rdfs:label "plants per hill"@en) SubClassOf( ) # Class: (plants per row) +AnnotationAssertion( "Number of plants per row."@en) AnnotationAssertion( ) -AnnotationAssertion( "Number of plants per row."@en) AnnotationAssertion( "plants/row"@en) AnnotationAssertion(rdfs:label "plants per row"@en) SubClassOf( ) # Class: (plants per square meter) +AnnotationAssertion( "Number of plants per square meter."@en) AnnotationAssertion( ) -AnnotationAssertion( "Number of plants per square meter."@en) AnnotationAssertion( "plants/m2"@en) AnnotationAssertion(rdfs:label "plants per square meter"@en) SubClassOf( ) # Class: (plants per hectare) +AnnotationAssertion( "An area density unit which is equal to the number of plants per hectare."@en) AnnotationAssertion( ) -AnnotationAssertion( "An area density unit which is equal to the number of plants per hectare."@en) AnnotationAssertion( "plants/ha"@en) AnnotationAssertion(rdfs:label "plants per hectare"@en) SubClassOf( ) # Class: (plants per pot) +AnnotationAssertion( "Number of plants per pot."@en) AnnotationAssertion( ) -AnnotationAssertion( "Number of plants per pot."@en) AnnotationAssertion( "plants/pot"@en) AnnotationAssertion(rdfs:label "plants per pot"@en) SubClassOf( ) @@ -4070,9 +4074,13 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (animal manure area density) +AnnotationAssertion( "An area density quality which inheres in animal manure by virtue of some influence exerted by the mass of animal manure applied in a given surface area."@en) AnnotationAssertion( ) +<<<<<<< Updated upstream AnnotationAssertion( "An area density quality which inheres in animal manure by virtue of some influence exerted by the mass of animal manure applied in a given surface area."@en) AnnotationAssertion( "amount of animal manure applied"@en) +======= +>>>>>>> Stashed changes AnnotationAssertion(rdfs:label "animal manure area density"@en) SubClassOf( ) @@ -4141,6 +4149,7 @@ SubClassOf( (land clearing date) +AnnotationAssertion( "The date of a land clearing process"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "land clearing date"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) @@ -4207,14 +4216,15 @@ SubClassOf( (ridging date) +AnnotationAssertion( "The date of a ridging process") AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ridging date"@en) SubClassOf( ) # Class: (ridging implement) +AnnotationAssertion( "A device used to create ridges."@en) AnnotationAssertion( ) -AnnotationAssertion( "A device used to create ridges."@en) AnnotationAssertion( "ridging device"@en) AnnotationAssertion(rdfs:label "ridging implement"@en) SubClassOf( ) @@ -4222,14 +4232,15 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (ridging device mounted on planting implement) +AnnotationAssertion( "A device used to create ridges at the same time than planting."@en) AnnotationAssertion( ) -AnnotationAssertion( "A device used to create ridges at the same time than planting."@en) AnnotationAssertion(rdfs:label "ridging device mounted on planting implement"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (crop residue moisture) +AnnotationAssertion( "The concentration of crop residue when measured in liquid water."@en) AnnotationAssertion( ) AnnotationAssertion( "Concentration of water in crop residue."@en) AnnotationAssertion(rdfs:label "crop residue moisture"@en) @@ -4238,8 +4249,8 @@ SubClassOf( (sprayer) +AnnotationAssertion(Annotation( "http://www.fao.org/3/Y2753E/Y2753E00.htm") "A device that applys the spray liquid through nozzles, which are attached to a horizontal structure (boom) and which are normally directed towards the ground."@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "http://www.fao.org/3/Y2753E/Y2753E00.htm") "A device that applys the spray liquid through nozzles, which are attached to a horizontal structure (boom) and which are normally directed towards the ground."@en) AnnotationAssertion( "A device used to spray a liquid."@en) AnnotationAssertion(rdfs:label "sprayer"@en) SubClassOf( ) @@ -4256,8 +4267,8 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (forage harvester) +AnnotationAssertion( "An agricultural implement that harvests forage plants to make silage."@en) AnnotationAssertion( ) -AnnotationAssertion( "An agricultural implement that harvests forage plants to make silage."@en) AnnotationAssertion( "chopper"@en) AnnotationAssertion( "forager"@en) AnnotationAssertion( "silage harvester"@en) @@ -4267,16 +4278,16 @@ SubClassOf( (reapper) +AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Reaper") "An agricultural implement that cuts and often also gathers crops when they are ripe."@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Reaper") "An agricultural implement that cuts and often also gathers crops when they are ripe."@en) AnnotationAssertion(rdfs:label "reapper"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) # Class: (digger) +AnnotationAssertion(Annotation( "https://www.britannica.com/topic/root-crop") "An agricultural implement, resembling a plow, that pulls up harvestable parts of plants growing underground."@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "https://www.britannica.com/topic/root-crop") "An agricultural implement, resembling a plow, that pulls up harvestable parts of plants growing underground."@en) AnnotationAssertion(rdfs:label "digger"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -4295,7 +4306,7 @@ SubClassOf( ObjectSomeValuesFrom(< AnnotationAssertion( "Distance between the top and the bottom of a pot."@en) AnnotationAssertion( ) -AnnotationAssertion( "A height entity that inheres in some ridge."@en) +AnnotationAssertion(rdfs:comment "A height entity that inheres in some ridge."@en) AnnotationAssertion(rdfs:label "ridge height"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) @@ -4303,30 +4314,30 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (distance between ridges) +AnnotationAssertion( "Distance between two ridges."@en) AnnotationAssertion( ) -AnnotationAssertion( "Distance between two ridges."@en) AnnotationAssertion(rdfs:label "distance between ridges"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) # Class: (aboveground biomass) +AnnotationAssertion(Annotation( "http://www.fao.org/3/j9345e/j9345e12.htm") "All living biomass above the soil including stem, stump, branches, bark, seeds and foliage."@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "http://www.fao.org/3/j9345e/j9345e12.htm") "All living biomass above the soil including stem, stump, branches, bark, seeds and foliage."@en) AnnotationAssertion( "aboveground organic material"@en) AnnotationAssertion(rdfs:label "aboveground biomass"@en) SubClassOf( ) # Class: (below-ground biomass) +AnnotationAssertion(Annotation( "http://www.fao.org/3/j9345e/j9345e12.htm") "All living biomass of live roots. Fine roots of less than (suggested) 2mm diameter are sometimes excluded because these often cannot be distinguished empirically from soil organic matter or litter."@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "http://www.fao.org/3/j9345e/j9345e12.htm") "All living biomass of live roots. Fine roots of less than (suggested) 2mm diameter are sometimes excluded because these often cannot be distinguished empirically from soil organic matter or litter."@en) AnnotationAssertion(rdfs:label "below-ground biomass"@en) SubClassOf( ) # Class: (seedling) +AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Seedling") "Young sporophyte developing out of a plant embryo from a seed:"@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "https://en.wikipedia.org/wiki/Seedling") "Young sporophyte developing out of a plant embryo from a seed:"@en) AnnotationAssertion(rdfs:label "seedling"@en) SubClassOf( ) @@ -4334,6 +4345,10 @@ SubClassOf( "https://en.wikipedia.org/wiki/Rainfed_agriculture") "A proccess in which water inputs rely only on rainfall."@en) AnnotationAssertion( ) +<<<<<<< Updated upstream +======= +AnnotationAssertion( "no irrigation"@en) +>>>>>>> Stashed changes AnnotationAssertion( "zero irrigation"@en) AnnotationAssertion( "rainfed"@en) AnnotationAssertion(rdfs:label "no irrigation process"@en) @@ -4344,8 +4359,8 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (jab planter) +AnnotationAssertion(Annotation( "https://www.terrateck.com/en/plantoirs/34-canne-a-semer.html") "A manual tool used to sow large seeds in rows or in bunches on plastic mulch films or in the earth. This device is used to sow seeds manually, while standing in a natural position."@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "https://www.terrateck.com/en/plantoirs/34-canne-a-semer.html") "A manual tool used to sow large seeds in rows or in bunches on plastic mulch films or in the earth. This device is used to sow seeds manually, while standing in a natural position."@en) AnnotationAssertion(rdfs:label "jab planter"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) @@ -4353,12 +4368,14 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (moist) +AnnotationAssertion( "A moistness quality inhering in a bearer by virtue of the bearer being partially covered in liquid."@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "moist"@en) SubClassOf( ) # Class: (crop residue removal process) +AnnotationAssertion( "A crop residue removal process in which crop residues are removed from the field."@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "crop residue removal process"@en) SubClassOf( ) @@ -4372,8 +4389,8 @@ SubClassOf( (plants per foot square) +AnnotationAssertion( "Number of plant per feet squared."@en) AnnotationAssertion( ) -AnnotationAssertion( "Number of plant per feet squared."@en) AnnotationAssertion( "plants/ft2"@en) AnnotationAssertion(rdfs:label "plants per foot square"@en) SubClassOf( ) @@ -4387,8 +4404,8 @@ SubClassOf( (plants per plot) +AnnotationAssertion( "Number of plants per plot."@en) AnnotationAssertion( ) -AnnotationAssertion( "Number of plants per plot."@en) AnnotationAssertion( "plants/plot"@en) AnnotationAssertion(rdfs:label "plants per plot"@en) SubClassOf( ) @@ -4406,37 +4423,42 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (harvest cut height) +AnnotationAssertion( "Distance between the ground and the point where the plant is cut for harvest."@en) AnnotationAssertion( ) -AnnotationAssertion( "Distance between the ground and the point where the plant is cut for harvest."@en) AnnotationAssertion(rdfs:label "harvest cut height"@en) SubClassOf( ) # Class: (pesticide amount) +AnnotationAssertion( "The amount of a pesticide"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pesticide amount"@en) SubClassOf( ) # Class: (number of pesticide application) +AnnotationAssertion( "The occurrence of a pesticide process"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "number of pesticide application"@en) SubClassOf( ) # Class: (pesticide application date) +AnnotationAssertion( "The time of a pesticide application process"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pesticide application date"@en) SubClassOf( ) # Class: (weeding chemical amount) +AnnotationAssertion( "The amount of a weeding chemical"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "weeding chemical amount"@en) SubClassOf( ) # Class: (distance between the water source and the field) +AnnotationAssertion( "Distance between water source and field."@en) AnnotationAssertion( ) AnnotationAssertion( "source distance"@en) AnnotationAssertion(rdfs:label "distance between the water source and the field"@en) @@ -4485,8 +4507,8 @@ SubClassOf( (GPS coordinates) +AnnotationAssertion(Annotation( "https://whatis.techtarget.com/definition/GPS-coordinates") "A measurement datum that is a unique identifier of a precise geographic location on the earth, usually expressed in alphanumeric characters"@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "https://whatis.techtarget.com/definition/GPS-coordinates") "A measurement datum that is a unique identifier of a precise geographic location on the earth, usually expressed in alphanumeric characters"@en) AnnotationAssertion( "geographic coordinate system"@en) AnnotationAssertion( "GPS coordinates measurement datum"@en) AnnotationAssertion(rdfs:label "GPS coordinates"@en) @@ -4494,24 +4516,24 @@ SubClassOf( (GPS coordinates of a field) +AnnotationAssertion( "A unique identifier of the postion a field on earth, usually expressed in alphanumeric characters."@en) AnnotationAssertion( ) -AnnotationAssertion( "A unique identifier of the postion a field on earth, usually expressed in alphanumeric characters."@en) AnnotationAssertion(rdfs:label "GPS coordinates of a field"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (field latitude coordinate) +AnnotationAssertion( "Latitude coordinate of a field."@en) AnnotationAssertion( ) -AnnotationAssertion( "Latitude coordinate of a field."@en) AnnotationAssertion( "field latitude coordinate measurement datum"@en) AnnotationAssertion(rdfs:label "field latitude coordinate"@en) SubClassOf( ) # Class: (field longitude coordinate) +AnnotationAssertion( "Longitude coordinate of a field."@en) AnnotationAssertion( ) -AnnotationAssertion( "Longitude coordinate of a field."@en) AnnotationAssertion( "field longitude coordinate measurement datum"@en) AnnotationAssertion(rdfs:label "field longitude coordinate"@en) SubClassOf( ) @@ -4545,16 +4567,16 @@ SubClassOf( (tree prunings) +AnnotationAssertion( "Prunings from trees (leaves, branches,...)"@en) AnnotationAssertion( ) -AnnotationAssertion( "Prunings from trees (leaves, branches,...)"@en) AnnotationAssertion(rdfs:label "tree prunings"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (agroforestry fallow) +AnnotationAssertion(Annotation( "http://www.fao.org/forestry/agroforestry/89998/en/") "Woody species planted and left to grow during fallow."@en) AnnotationAssertion( ) -AnnotationAssertion(Annotation( "http://www.fao.org/forestry/agroforestry/89998/en/") "Woody species planted and left to grow during fallow."@en) AnnotationAssertion( "improved fallows"@en) AnnotationAssertion(rdfs:label "agroforestry fallow"@en) SubClassOf( ) @@ -4574,8 +4596,8 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (agrisilviculture) +AnnotationAssertion( "A combination of crops and trees on the same land at the same time."@en) AnnotationAssertion( ) -AnnotationAssertion( "A combination of crops and trees on the same land at the same time."@en) AnnotationAssertion( "agrisilvicultural system"@en) AnnotationAssertion(rdfs:label "agrisilviculture"@en) SubClassOf( ) @@ -4621,15 +4643,15 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (water tank) +AnnotationAssertion( "A manufactured container within which water is stored."@en) AnnotationAssertion( ) -AnnotationAssertion( "A manufactured container within which water is stored."@en) AnnotationAssertion(rdfs:label "water tank"@en) SubClassOf( ) # Class: (grass strip) +AnnotationAssertion( "A vegetated area which includes strips of grass within a field or farm created for erosion control, typically they are placed along contour lines."@en) AnnotationAssertion( ) -AnnotationAssertion( "A vegetated area which includes strips of grass within a field or farm created for erosion control, typically they are placed along contour lines."@en) AnnotationAssertion(rdfs:label "grass strip"@en) SubClassOf( ) @@ -4797,16 +4819,16 @@ SubClassOf( (weed puller) +AnnotationAssertion( "An agricultural implement that is used to pull out plant from the soil. A weed puller is usually manual."@en) AnnotationAssertion( ) -AnnotationAssertion( "An agricultural implement that is used to pull out plant from the soil. A weed puller is usually manual."@en) AnnotationAssertion(rdfs:label "weed puller"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) # Class: (mower) +AnnotationAssertion( "An agricultural implement that is used to cut grass or any plant that grows on the ground."@en) AnnotationAssertion( ) -AnnotationAssertion( "An agricultural implement that is used to cut grass or any plant that grows on the ground."@en) AnnotationAssertion( "weed cutter") AnnotationAssertion(rdfs:label "mower"@en) SubClassOf( ) @@ -4886,8 +4908,8 @@ SubClassOf( (raised seedbed) +AnnotationAssertion(Annotation( "http://www.nzdl.org/gsdlmod?e=d-00000-00---off-0hdl--00-0----0-10-0---0---0direct-10---4-------0-1l--11-en-50---20-about---00-0-1-00-0--4----0-0-11-10-0utfZz-8-00&cl=CL1.16&d=HASH412cd503b5262205ac14c6.6>=1") "A seedbed that is raised-up. They are especially advantageous for clayey soils under high rainfall or wherever else drainage is likely to be poor.") AnnotationAssertion( ) -AnnotationAssertion(Annotation( "http://www.nzdl.org/gsdlmod?e=d-00000-00---off-0hdl--00-0----0-10-0---0---0direct-10---4-------0-1l--11-en-50---20-about---00-0-1-00-0--4----0-0-11-10-0utfZz-8-00&cl=CL1.16&d=HASH412cd503b5262205ac14c6.6>=1") "A seedbed that is raised-up. They are especially advantageous for clayey soils under high rainfall or wherever else drainage is likely to be poor.") AnnotationAssertion( "raised bed") AnnotationAssertion(rdfs:label "raised seedbed"@en) SubClassOf( ) @@ -5164,8 +5186,8 @@ SubClassOf( (water pressure spraying weeding process) +AnnotationAssertion( "A mechanical control weeding process in which a forceful stream of water is used to dislodge unwanted plants."@en) AnnotationAssertion( ) -AnnotationAssertion( "A mechanical control weeding process in which a forceful stream of water is used to dislodge unwanted plants."@en) AnnotationAssertion(rdfs:label "water pressure spraying weeding process"@en) SubClassOf( ) @@ -5398,6 +5420,7 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (agricultural experimental multiplot) +AnnotationAssertion( "Multiple sites within which agricultural experimental process is conducted"@en) AnnotationAssertion(rdfs:label "agricultural experimental multiplot"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) From 119f8fbc6ef31489b9a6875a244bdacfe99707f9 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Sun, 17 Oct 2021 21:46:01 -0400 Subject: [PATCH 16/22] fix commit error --- src/ontology/agro-edit.owl | 17 ++++------------- 1 file changed, 4 insertions(+), 13 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index eb0fb96..c5d96c7 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -2910,9 +2910,9 @@ SubClassOf( (strip plot design) -AnnotationAssertion(Annotation( "https://books.google.fr/books?id=PVN7_XRhpdUC&printsec=frontcover&source=gbs_ge_summary_r&cad=0#v=onepage&q&f=false") "An experimental design in which the desired precision for measuring the interaction effect between the two factors is higher than that for measuring the main effect of either one of the two factors. This is accomplished with the use of three plot sizes : -1. Vertical strip plot for the first factor – vertical factor -2. Horizontal strip plot for the second factor – horizontal factor +AnnotationAssertion(Annotation( "https://books.google.fr/books?id=PVN7_XRhpdUC&printsec=frontcover&source=gbs_ge_summary_r&cad=0#v=onepage&q&f=false") "An experimental design in which the desired precision for measuring the interaction effect between the two factors is higher than that for measuring the main effect of either one of the two factors. This is accomplished with the use of three plot sizes : +1. Vertical strip plot for the first factor – vertical factor +2. Horizontal strip plot for the second factor – horizontal factor 3. Interaction plot for the interaction between 2 factors"@en) AnnotationAssertion( "split block design"@en) AnnotationAssertion(rdfs:label "strip plot design"@en) @@ -3773,11 +3773,8 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (agricultural product storage process) AnnotationAssertion( "A planned process in which the harvest is stored."@en) -<<<<<<< Updated upstream AnnotationAssertion(rdfs:label "agricultural product storage process"@en) -======= AnnotationAssertion(rdfs:label "storage process"@en) ->>>>>>> Stashed changes SubClassOf( ) # Class: (cutting process) @@ -4076,11 +4073,8 @@ SubClassOf( ObjectSomeValuesFrom(< AnnotationAssertion( "An area density quality which inheres in animal manure by virtue of some influence exerted by the mass of animal manure applied in a given surface area."@en) AnnotationAssertion( ) -<<<<<<< Updated upstream AnnotationAssertion( "An area density quality which inheres in animal manure by virtue of some influence exerted by the mass of animal manure applied in a given surface area."@en) AnnotationAssertion( "amount of animal manure applied"@en) -======= ->>>>>>> Stashed changes AnnotationAssertion(rdfs:label "animal manure area density"@en) SubClassOf( ) @@ -4345,10 +4339,7 @@ SubClassOf( "https://en.wikipedia.org/wiki/Rainfed_agriculture") "A proccess in which water inputs rely only on rainfall."@en) AnnotationAssertion( ) -<<<<<<< Updated upstream -======= AnnotationAssertion( "no irrigation"@en) ->>>>>>> Stashed changes AnnotationAssertion( "zero irrigation"@en) AnnotationAssertion( "rainfed"@en) AnnotationAssertion(rdfs:label "no irrigation process"@en) @@ -5671,4 +5662,4 @@ AnnotationAssertion(owl:deprecated "experiment objective"@en) AnnotationAssertion( "kg/ha"@en) AnnotationAssertion( "t/ha"@en) -) \ No newline at end of file +) From e1f2bbc2ce4f64a7039a81498fbdbebe208120c3 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Wed, 20 Oct 2021 15:11:58 -0400 Subject: [PATCH 17/22] Updated def --- src/ontology/patterns/eq.owl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/ontology/patterns/eq.owl b/src/ontology/patterns/eq.owl index 9bda54c..bdbc3d7 100644 --- a/src/ontology/patterns/eq.owl +++ b/src/ontology/patterns/eq.owl @@ -496,7 +496,7 @@ - The distance of a whole plant + The distance between two plants distance between plants @@ -4005,5 +4005,5 @@ - + From 226d43f7819ff1258e3dbdb78ee8d08578a42e07 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Wed, 20 Oct 2021 15:43:58 -0400 Subject: [PATCH 18/22] updated def per comment suggestions #102 @celineaubert --- src/ontology/agro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 09b00ec..92f60f1 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4246,7 +4246,7 @@ SubClassOf( (boom sprayer) -AnnotationAssertion(Annotation( "https://www.google.com/patents/US8420070") "An implement that is used to spray liquid. It usually has an air pump which compresses air into the tanks and pressurizes the liquid to spray. "@en) +AnnotationAssertion(Annotation( "https://www.google.com/patents/US8420070") Annotation(rdfs:comment "https://en.wikipedia.org/w/index.php?title=Sprayer&oldid=1031049884"@en) "An implement which is a pipe for distributing spray using attached nozzles. It has a list of system components that work together to deliver the spray fluid."@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "boom sprayer"@en) SubClassOf( ) From 082431d54d008face3bb091a43820b0915fab61c Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Wed, 20 Oct 2021 15:49:53 -0400 Subject: [PATCH 19/22] updated def per comments #100 @celineaubert --- src/ontology/agro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index b05f3a8..b17a1f6 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4395,7 +4395,7 @@ SubClassOf( (number of square meter harvested) -AnnotationAssertion( "Number of square meters harvested in an experiment."@en) +AnnotationAssertion( "number of square meters of agricultural field or plot harvested."@en) AnnotationAssertion( ) AnnotationAssertion( "number of m2 harvested"@en) AnnotationAssertion( "number of m2 units harvested"@en) From a98afd4074d35b3a8450ef7d71f3f0f4dbdaf3d0 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Thu, 21 Oct 2021 09:41:17 -0400 Subject: [PATCH 20/22] Updated synonyms per comments #112 Also updated neighbouring terms' label and synonyms to fit well See changes in agro-edit.owl for full list --- src/ontology/agro-edit.owl | 9 ++++++--- src/ontology/imports/pato_import.owl | 4 ++-- src/ontology/patterns/eq.owl | 17 ++++++++++++----- 3 files changed, 20 insertions(+), 10 deletions(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 730edec..efc5934 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4420,6 +4420,7 @@ SubClassOf( (number of pesticide application) AnnotationAssertion( ) +AnnotationAssertion( "total number of pesticide application") AnnotationAssertion(rdfs:label "number of pesticide application"@en) SubClassOf( ) @@ -5636,12 +5637,14 @@ SubClassOf( ObjectSomeValuesFrom( ) -AnnotationAssertion( "total number of land levelling passes"@en) -AnnotationAssertion( "total number of tillage passes"@en) +AnnotationAssertion(rdfs:label "number of land levelling passes"@en) +AnnotationAssertion(rdfs:label "number of tillage passes"@en) AnnotationAssertion( "organic fertilizer area density"@en) +AnnotationAssertion( "total number of fertilizer applications") AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) +AnnotationAssertion( "total number of irrigations") AnnotationAssertion( "number of weeding interventions") -AnnotationAssertion( "total number of puddling passes"@en) +AnnotationAssertion(rdfs:label "number of puddling passes"@en) AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) AnnotationAssertion( "pruning date"@en) AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl index 483f6c3..1d9a69c 100644 --- a/src/ontology/imports/pato_import.owl +++ b/src/ontology/imports/pato_import.owl @@ -1263,7 +1263,7 @@ A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. - GOC:pdt + GOC:pdt @@ -3989,5 +3989,5 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - + diff --git a/src/ontology/patterns/eq.owl b/src/ontology/patterns/eq.owl index 9bda54c..39d4cdb 100644 --- a/src/ontology/patterns/eq.owl +++ b/src/ontology/patterns/eq.owl @@ -6,7 +6,8 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" - xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"> + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> @@ -28,6 +29,12 @@ + + + + + + + From 2cb561302d043830e9b2f28cd6947a4edbc7de42 Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Thu, 21 Oct 2021 10:23:08 -0400 Subject: [PATCH 21/22] Update .travis.yml --- .travis.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index a707165..39be6e8 100644 --- a/.travis.yml +++ b/.travis.yml @@ -24,4 +24,6 @@ branches: notifications: email: - - krishna.udaiwal@gmail.com + - pbuttigi@mpi-bremen.de + - m.a.laporte@cgiar.org + - c.aubert@cgiar.org From 91ba5465f49a003280e793493b4904de68d98fbe Mon Sep 17 00:00:00 2001 From: Krishna Udaiwal Date: Wed, 27 Oct 2021 14:06:59 -0400 Subject: [PATCH 22/22] Changed def per comment in issue #101 --- src/ontology/agro-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/agro-edit.owl b/src/ontology/agro-edit.owl index 37b9936..bb479e6 100644 --- a/src/ontology/agro-edit.owl +++ b/src/ontology/agro-edit.owl @@ -4293,7 +4293,7 @@ SubClassOf( ObjectSomeValuesFrom(< # Class: (ridge height) -AnnotationAssertion( "A height entity that inheres in some ridge."@en) +AnnotationAssertion( "Distance between the top and the bottom of a ridge."@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ridge height"@en) EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( )))