adgpu_v1.1_runtimes.patch

diff --git a/host/src/performdocking.cpp b/host/src/performdocking.cpp
index ab7d009..189eed0 100644
--- a/host/src/performdocking.cpp
+++ b/host/src/performdocking.cpp
@@ -96,6 +96,8 @@ Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
 #include "stringify.h"
 #include "correct_grad_axisangle.h"
 
+#include <sys/time.h>
+
 int docking_with_gpu(const Gridinfo*           mygrid,
                 /*const*/ float*               cpu_floatgrids,
                            Dockpars*                   mypars,
@@ -245,6 +247,9 @@ filled with clock() */
        clock_t clock_stop_docking;
        clock_t clock_stop_program_before_clustering;
 
+double leo_num_sec, leo_num_usec, leo_elapsed_sec;
+timeval leo_time_start, leo_time_end;
+
        //setting number of blocks and threads
        threadsPerBlock = NUM_OF_THREADS_PER_BLOCK;
        blocksPerGridForEachEntity = mypars->pop_size * mypars->num_of_runs;
@@ -554,6 +559,7 @@ filled with clock() */
        */
 
        clock_start_docking = clock();
+gettimeofday(&leo_time_start, NULL);
 
        //print progress bar
 #ifndef DOCK_DEBUG
@@ -1107,6 +1113,11 @@ filled with clock() */
                memcopyBufferObjectFromDevice(command_queue,cpu_energies,mem_dockpars_energies_next,size_energies);
        }
 
+gettimeofday(&leo_time_end, NULL);
+leo_num_sec = leo_time_end.tv_sec - leo_time_start.tv_sec;
+leo_num_usec = leo_time_end.tv_usec - leo_time_start.tv_usec;
+leo_elapsed_sec = leo_num_sec + (leo_num_usec/1000000);
+printf("Docking run time: %.3f sec\n", leo_elapsed_sec);
 
 #if defined (DOCK_DEBUG)
        for (int cnt_pop=0;cnt_pop<size_populations/sizeof(float);cnt_pop++)
@@ -1151,6 +1162,16 @@ filled with clock() */
 
        clock_stop_docking = clock();
 
+char leo_report_file_name[256];
+FILE* fp;
+
+strcpy(leo_report_file_name, mypars->resname);
+strcat(leo_report_file_name, ".dlg");
+fp = fopen(leo_report_file_name, "a");
+fprintf(fp, "\n\n\nDocking run time %.3f sec\n", leo_elapsed_sec);
+fclose(fp);
+
+
 /*
        clReleaseMemObject(mem_atom_charges_const);
         clReleaseMemObject(mem_atom_types_const);