-
Notifications
You must be signed in to change notification settings - Fork 0
/
NAMESPACE
58 lines (57 loc) · 1.48 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
# Generated by roxygen2: do not edit by hand
export(BatchEffect_Combat)
export(BatchEffect_PCAHeatmap)
export(BatchEffect_PCAHeatmap_Merge)
export(BatchEffect_PointPlot)
export(BatchEffect_Visualise)
export(BatchEffect_prc)
export(Clean_OldSets)
export(ConvertSet)
export(DMP_limma)
export(DMR_dmrcate)
export(FindBadSamples)
export(Make_RGset)
export(MergeMetadata)
export(ProbeBackgroundCheck)
export(ProbeExclusion)
export(ProbeNormalisation)
export(RemoveBadSamples)
export(getPath)
import(dplyr)
import(factoextra)
import(ggplot2)
import(minfiDataEPIC)
import(sva)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(minfi,addSnpInfo)
importFrom(minfi,densityPlot)
importFrom(minfi,detectionP)
importFrom(minfi,dropLociWithSnps)
importFrom(minfi,getAnnotation)
importFrom(minfi,getBeta)
importFrom(minfi,getM)
importFrom(minfi,preprocessFunnorm)
importFrom(minfi,preprocessQuantile)
importFrom(minfi,preprocessRaw)
importFrom(minfi,read.metharray)
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(stats,aov)
importFrom(stats,as.formula)
importFrom(stats,cor.test)
importFrom(stats,model.matrix)
importFrom(stats,prcomp)
importFrom(stringr,str_detect)
importFrom(tibble,rownames_to_column)
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(utils,tail)
importFrom(utils,write.csv)