ci.yml

name: firecrown-ci


on:
  push:
    branches:
      - 'master'

  pull_request:
    branches:
      - '*'

  schedule:
    - cron: '47 1 * * *'

jobs:
  firecrown-miniforge:
    name: Firecrown (${{ matrix.os }}, python-${{ matrix.python-version }}, Miniforge)
    runs-on: ${{ matrix.os }}-latest
    strategy:
      matrix:
        os: ["ubuntu", "macos"]
        python-version: ["3.9", "3.10", "3.11"]
    steps:
      - uses: actions/checkout@v3
      - name: Setup miniforge
        uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          activate-environment: firecrown_developer
          python-version: ${{ matrix.python-version }}
          miniforge-variant: Mambaforge
          show-channel-urls: true
          use-mamba: true
      - name: Cache date
        id: get-date
        run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT
        shell: bash
      - name: Cache Conda env
        uses: actions/cache@v3
        with:
          path: ${{ env.CONDA }}/envs
          key: miniforge-${{ runner.os }}--${{ runner.arch }}--python-${{ matrix.python-version }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }}
        env:
          CACHE_NUMBER: 0
        id: cache
      - name: Update environment
        run: |
          conda env update -q -v -n firecrown_developer -f environment.yml
        if: steps.cache.outputs.cache-hit != 'true'
      - name: Setting up Firecrown
        shell: bash -l {0}
        run: |
          export FIRECROWN_DIR=${PWD}
          conda env config vars set FIRECROWN_DIR=${FIRECROWN_DIR}
          conda activate firecrown_developer
          pip install --no-deps -e .
      - name: Setting up CosmoSIS    
        shell: bash -l {0}
        run: |
          source ${CONDA_PREFIX}/bin/cosmosis-configure
          pushd ${CONDA_PREFIX}
          cosmosis-build-standard-library
          export CSL_DIR=${PWD}/cosmosis-standard-library
          conda env config vars set CSL_DIR=${CSL_DIR}
          conda activate firecrown_developer
        if: steps.cache.outputs.cache-hit != 'true'      
      - name: Setting up Cobaya
        shell: bash -l {0}
        run: python -m pip install cobaya
        if: steps.cache.outputs.cache-hit != 'true'      
      - name: Ensure clear Jupyter Notebooks
        uses: ResearchSoftwareActions/EnsureCleanNotebooksAction@1.1
      - name: Running black check
        shell: bash -l {0}
        run: |
          black --check firecrown
          black --check tests
          black --check examples
      - name: Running flake8
        shell: bash -l {0}
        run: |
          flake8 firecrown
          flake8 examples
          flake8 tests
      - name: Running mypy
        shell: bash -l {0}
        run: |
          mypy -p firecrown
          mypy -p examples
          mypy -p tests
      - name: Running pylint
        shell: bash -l {0}
        run: |
          pylint --rcfile tests/pylintrc  tests
          pylint --rcfile firecrown/models/pylintrc firecrown/models
          pylint firecrown
      - name: Running pytest
        shell: bash -l {0}
        run: python -m pytest -vv
      - name: Running example - cosmosis - cosmic-shear
        shell: bash -l {0}
        run: |
          cd examples/cosmicshear
          python generate_cosmicshear_data.py
          cosmosis cosmicshear.ini
      - name: Running example - cosmosis - des-y1-3x2pt
        shell: bash -l {0}
        run: |
          cd examples/des_y1_3x2pt
          cosmosis des_y1_3x2pt.ini
      - name: Running example - cosmosis - des-y1-3x2pt-PT
        shell: bash -l {0}
        run: |
          cd examples/des_y1_3x2pt
          cosmosis des_y1_3x2pt_PT.ini
      - name: Running example - cobaya - des-y1-3x2pt
        shell: bash -l {0}
        run: |
          cd examples/des_y1_3x2pt
          cobaya-run cobaya_evaluate.yaml
      - name: Running example - cobaya - des-y1-3x2pt-PT
        shell: bash -l {0}
        run: |
          cd examples/des_y1_3x2pt
          cobaya-run cobaya_evaluate_PT.yaml
      - name: Running example - NumCosmo - des-y1-3x2pt
        shell: bash -l {0}
        run: |
          cd examples/des_y1_3x2pt
          python numcosmo_run.py
      - name: Running example - NumCosmo - des-y1-3x2pt-PT
        shell: bash -l {0}
        run: |
          cd examples/des_y1_3x2pt
          python numcosmo_run_PT.py
      - name: Running example - cosmosis - srd_sn
        shell: bash -l {0}
        run: |
          cd examples/srd_sn
          cosmosis sn_srd.ini
      - name: Running example - NumCosmo - srd_sn
        shell: bash -l {0}
        run: |
          cd examples/srd_sn
          python numcosmo_run.py
      - name: Running example - cosmosis - cluster_number_counts
        shell: bash -l {0}
        run: |
          cd examples/cluster_number_counts
          python generate_rich_mean_mass_sacc_data.py
          cosmosis cluster_counts_redshift_richness.ini
          cosmosis cluster_mean_mass_redshift_richness.ini
          cosmosis cluster_counts_mean_mass_redshift_richness.ini
      - name: Code coverage
        if: ${{ (matrix.os == 'ubuntu') && (matrix.python-version == '3.11') }}
        shell: bash -l {0}
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
        run: |
          python -m pip install --no-input coveralls
          coverage run --source=firecrown -m pytest tests/
          coveralls --service=github