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sessionInfo.txt
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sessionInfo.txt
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R version 4.2.1 (2022-06-23)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Ventura 13.3.1
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
Random number generation:
RNG: Mersenne-Twister
Normal: Inversion
Sample: Rounding
locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
attached base packages:
[1] grid parallel stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] dplyr_1.0.10 lumi_2.48.0
[3] jsonlite_1.8.3 tidyr_1.2.1
[5] gridExtra_2.3 reshape2_1.4.4
[7] RColorBrewer_1.1-3 XML_3.99-0.12
[9] ggExtra_0.10.0 gprofiler2_0.2.1
[11] gt_0.8.0 Gviz_1.40.1
[13] UpSetR_1.4.0 gtools_3.9.4
[15] ggdendro_0.1.23 TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
[17] ChIPpeakAnno_3.30.1 ggridges_0.5.4
[19] ggalluvial_0.12.3 alluvial_0.1-2
[21] VariantAnnotation_1.42.1 Rsamtools_2.12.0
[23] ggthemes_4.2.4 cowplot_1.1.1
[25] ggrepel_0.9.2 ggfortify_0.4.15
[27] pheatmap_1.0.12 GenomicFeatures_1.48.4
[29] AnnotationDbi_1.58.0 BSgenome.Hsapiens.UCSC.hg19_1.4.3
[31] BSgenome_1.64.0 rtracklayer_1.56.1
[33] Biostrings_2.64.1 XVector_0.36.0
[35] data.table_1.14.6 readxl_1.4.1
[37] openxlsx_4.2.5.1 stringr_1.5.0
[39] magrittr_2.0.3 bsseq_1.32.0
[41] SummarizedExperiment_1.26.1 MatrixGenerics_1.8.1
[43] matrixStats_0.63.0 GenomicRanges_1.48.0
[45] GenomeInfoDb_1.32.4 IRanges_2.30.1
[47] S4Vectors_0.34.0 e1071_1.7-12
[49] caret_6.0-93 lattice_0.20-45
[51] ggplot2_3.4.1 Biobase_2.56.0
[53] BiocGenerics_0.42.0 preprocessCore_1.58.0
[55] knitr_1.41 edgeR_3.38.4
[57] limma_3.52.4
loaded via a namespace (and not attached):
[1] Hmisc_4.7-2 class_7.3-20 ps_1.7.2 foreach_1.5.2
[5] crayon_1.5.2 MASS_7.3-58.1 rhdf5filters_1.8.0 nlme_3.1-160
[9] backports_1.4.1 rlang_1.0.6 minfi_1.42.0 filelock_1.0.2
[13] BiocParallel_1.30.4 rjson_0.2.21 bit64_4.0.5 glue_1.6.2
[17] rngtools_1.5.2 processx_3.8.0 methylumi_2.42.0 regioneR_1.28.0
[21] tidyselect_1.2.0 nleqslv_3.3.3 GenomicAlignments_1.32.1 xtable_1.8-4
[25] evaluate_0.18 cli_3.6.0 zlibbioc_1.42.0 rstudioapi_0.14
[29] doRNG_1.8.2 miniUI_0.1.1.1 bslib_0.4.1 rpart_4.1.19
[33] ensembldb_2.20.2 lambda.r_1.2.4 shiny_1.7.3 xfun_0.35
[37] askpass_1.1 multtest_2.52.0 cluster_2.1.4 KEGGREST_1.36.3
[41] tibble_3.1.8 base64_2.0.1 biovizBase_1.44.0 scrime_1.3.5
[45] listenv_0.8.0 png_0.1-8 permute_0.9-7 reshape_0.8.9
[49] future_1.29.0 ipred_0.9-13 withr_2.5.0 bitops_1.0-7
[53] RBGL_1.72.0 plyr_1.8.8 cellranger_1.1.0 AnnotationFilter_1.20.0
[57] hardhat_1.2.0 pROC_1.18.0 pillar_1.8.1 bumphunter_1.38.0
[61] cachem_1.0.6 fs_1.5.2 DelayedMatrixStats_1.18.2 vctrs_0.5.2
[65] ellipsis_0.3.2 generics_0.1.3 lava_1.7.0 tools_4.2.1
[69] foreign_0.8-83 munsell_0.5.0 proxy_0.4-27 DelayedArray_0.22.0
[73] fastmap_1.1.0 compiler_4.2.1 httpuv_1.6.6 beanplot_1.3.1
[77] plotly_4.10.1 GenomeInfoDbData_1.2.8 prodlim_2019.11.13 InteractionSet_1.24.0
[81] deldir_1.0-6 utf8_1.2.3 later_1.3.0 BiocFileCache_2.4.0
[85] recipes_1.0.3 affy_1.74.0 scales_1.2.1 graph_1.74.0
[89] sparseMatrixStats_1.8.0 genefilter_1.78.0 lazyeval_0.2.2 promises_1.2.0.1
[93] latticeExtra_0.6-30 R.utils_2.12.2 checkmate_2.1.0 rmarkdown_2.18
[97] nor1mix_1.3-0 statmod_1.4.37 siggenes_1.70.0 dichromat_2.0-0.1
[101] HDF5Array_1.24.2 survival_3.4-0 yaml_2.3.6 htmltools_0.5.3
[105] memoise_2.0.1 BiocIO_1.6.0 locfit_1.5-9.6 quadprog_1.5-8
[109] viridisLite_0.4.1 digest_0.6.30 assertthat_0.2.1 mime_0.12
[113] rappdirs_0.3.3 futile.options_1.0.1 RSQLite_2.2.19 future.apply_1.10.0
[117] VennDiagram_1.7.3 blob_1.2.3 R.oo_1.25.0 futile.logger_1.4.3
[121] splines_4.2.1 Formula_1.2-4 labeling_0.4.2 Rhdf5lib_1.18.2
[125] illuminaio_0.38.0 ProtGenerics_1.28.0 RCurl_1.98-1.9 hms_1.1.2
[129] rhdf5_2.40.0 colorspace_2.1-0 base64enc_0.1-3 BiocManager_1.30.19
[133] nnet_7.3-18 websocket_1.4.1 sass_0.4.4 GEOquery_2.64.2
[137] Rcpp_1.0.9 mclust_6.0.0 fansi_1.0.4 tzdb_0.3.0
[141] parallelly_1.32.1 ModelMetrics_1.2.2.2 R6_2.5.1 webshot2_0.1.0
[145] lifecycle_1.0.3 formatR_1.12 zip_2.2.2 curl_4.3.3
[149] affyio_1.66.0 jquerylib_0.1.4 Matrix_1.5-3 iterators_1.0.14
[153] gower_1.0.0 htmlwidgets_1.5.4 biomaRt_2.52.0 purrr_0.3.5
[157] chromote_0.1.1 timechange_0.1.1 mgcv_1.8-41 globals_0.16.2
[161] openssl_2.0.4 htmlTable_2.4.1 codetools_0.2-18 lubridate_1.9.0
[165] prettyunits_1.1.1 dbplyr_2.2.1 R.methodsS3_1.8.2 gtable_0.3.1
[169] DBI_1.1.3 httr_1.4.4 KernSmooth_2.23-20 stringi_1.7.12
[173] progress_1.2.2 farver_2.1.1 annotate_1.74.0 timeDate_4021.106
[177] xml2_1.3.3 restfulr_0.0.15 interp_1.1-3 readr_2.1.3
[181] bit_4.0.5 jpeg_0.1-10 pkgconfig_2.0.3