_toc.yml

# Table of contents
# Learn more at https://jupyterbook.org/customize/toc.html

format: jb-book
root: content/intro

parts:
  - caption: Course Overview
    chapters:
    - file: content/Course_Overview
  - caption: Getting Started
    chapters:
    - file: content/00_Download_Data
    - file: content/Install_Software
    - file: content/Recommended_Reading
  - caption: Theoretical Background
    chapters:
    - file: content/MR_Physics
    - file: content/fMRI_Sequences
    - file: content/Signal_Decay
    - file: content/TE_Dependence
    - file: content/plot_approach_figures.md
  - caption: Practical Resources
    chapters:
    - file: content/Multi_Echo_Datasets
    - file: content/Acquiring_Multi_Echo_Data
    - file: content/Processing_Multi_Echo_Data
  - caption: Analysis Tutorials
    chapters:
    - file: content/01_Optimal_Combination_with_t2smap
    - file: content/02_Volume-wise_T2star_estimation_with_t2smap
    - file: content/03_Denoising_with_tedana
    - file: content/04_Dual_Echo_Denoising
    - file: content/05_3dMEPFM
    - file: content/06_Cerebrovascular_Reactivity_Mapping.md
    - file: content/07_Manual_Classification_with_rica.md
    - file: content/08_ICA_Based_Denoising.md
  - caption: Final Thoughts
    chapters:
    - file: content/bibliography.md
    - file: content/build_information.md
    - file: content/glossary.md