DESCRIPTION

Package: EpiTrace
Type: Package
Title: Cell age and lineage inference from single cell ATAC data
Version: 0.0.1.3
Author: Yi Zhang <synapse@pku.edu.cn>
Maintainer: Yi Zhang <synapse@pku.edu.cn>
Description: Inference of cell age and phylogeny from single cell ATAC data.  
    The package does:
    1. calculate the age of a cell or a cluster of cell; 
    2. calculate the phylogeny of cell clusters; 
    3. define age-dependent variability of chromatin accessibility. 
Encoding: UTF-8
LazyData: true
License: GPL (>= 3)
URL: https://github.com/MagpiePKU/EpiTrace
Imports:
    dplyr,
    tidyr,
    RColorBrewer,
    ggplot2,
    Seurat (>= 4.0),
    SeuratObject, 
    Signac (>= 1.5.0),
    GenomicRanges,
    WGCNA (>= 1.7),
    stringr,
    parallel,
    nnls,
    ggtree,
    ape,
    ggpubr,
    Matrix,
    matrixStats,
    plyranges,
    sparseMatrixStats
Remotes: 
    caleblareau/easyLift
Suggests:
VignetteBuilder: knitr